Gene detail information of Glyur000967s00032373.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G43530.10Helicase protein with RING/U-box domain
NRKEH41141.10DNA repair helicase rad5,16, putative [Medicago truncatula]
COGYP_003953485.11.00E-35snf2/helicase domain-containing protein [Stigmatella aurantiaca DW4/3-1]
Swissprottr|Q9FIY7|SM3L3_ARATH0Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3
trEMBLtr|A0A072VHP2|A0A072VHP2_MEDTR0DNA repair helicase rad5,16, putative {ECO:0000313|EMBL:KEH41141.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold009671337919772+


Gene family

Gene familysubfamily
Transcription Factors FamilySNF2
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

molecular_function

GO:0003677  DNA binding

GO:0005515  protein binding

GO:0005524  ATP binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000967s00032373.1PF00176.18SNF2_N4428138.00E-80
Glyur000967s00032373.1PF13920.1zf-C3HC4_38929377.90E-10
Glyur000967s00032373.1PF00271.26Helicase_C100010772.70E-15


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control2.044
SRR1783600control2.059
SRR1783602moderate drought stress0.938
SRR1811619moderate drought stress0.939

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain2.693
DRR006520Root Summer glycyrrhizin high producing strain2.605
DRR006521Root Winter glycyrrhizin high producing strain0.460
DRR006522Root Winter glycyrrhizin high producing strain0.445
DRR006523Root Summer glycyrrhizin low producing strain1.039
DRR006524Root Summer glycyrrhizin low producing strain1.033
DRR006525Leaf Summer glycyrrhizin high producing strain0.315
DRR006526Leaf Summer glycyrrhizin high producing strain0.280

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)6.738
SRR2868004Drought Stress(Tissue:root)3.623
SRR2967015Control (Tissue:root)3.574

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave1.712
SRR9715740Leave0.026
SRR9715741Leave0.530
SRR9715739Root0.231
SRR9715742Root1.435
SRR9715743Root1.274

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h7.449
SRR8749028MeJA induced 9h4.877
SRR8749029MeJA induced 9h2.294
SRR8749030Uninduced1.188
SRR8749031Uninduced0.560
SRR8749032Uninduced0.279

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root5.161
SRR8400027Control-Root5.251

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved