Gene detail information of Glyur000969s00032265.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G05490.1 | 2.00E-47 | chromatin remodeling 31 |
| NR | KEH22460.1 | 6.63E-73 | SNF2 family amino-terminal protein [Medicago truncatula] |
| Swissprot | tr|F4I8S3|CLSY3_ARATH | 1.00E-52 | SNF2 domain-containing protein CLASSY 3 |
| trEMBL | tr|A0A072U9G6|A0A072U9G6_MEDTR | 2.00E-73 | SNF2 family amino-terminal protein {ECO:0000313|EMBL:KEH22460.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00969 | 18282 | 20591 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | SNF2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K10875 | RAD54L, RAD54 | EC:3.6.4.- | Homologous recombination | map03440 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000969s00032265.1 | PF00176.18 | SNF2_N | 55 | 236 | 1.10E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.081 |
| SRR1783602 | moderate drought stress | 0.106 |
| SRR1811619 | moderate drought stress | 0.103 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.420 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.415 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.155 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.734 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.844 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.000 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.026 |
| SRR2967015 | Control (Tissue:root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.010 |
| SRR9715740 | Leave | 3.243 |
| SRR9715741 | Leave | 0.511 |
| SRR9715739 | Root | 0.174 |
| SRR9715742 | Root | 1.248 |
| SRR9715743 | Root | 0.614 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.144 |
| SRR8749029 | MeJA induced 9h | 0.084 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.069 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.200 |
| SRR8400027 | Control-Root | 0.161 |