Gene detail information of Glyur000971s00030742.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G20180.3 | 8.00E-49 | phytochrome interacting factor 3-like 5 |
| NR | KEH42414.1 | 0 | transcription factor [Medicago truncatula] |
| Swissprot | tr|Q8GZM7|PIF1_ARATH | 4.00E-77 | Transcription factor PIF1 |
| trEMBL | tr|A0A072VK93|A0A072VK93_MEDTR | 0 | Transcription factor {ECO:0000313|EMBL:KEH42414.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00971 | 52955 | 63443 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | bHLH |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000971s00030742.1 | PF00010.21 | HLH | 320 | 366 | 4.60E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.616 |
| SRR1783600 | control | 0.583 |
| SRR1783602 | moderate drought stress | 0.693 |
| SRR1811619 | moderate drought stress | 0.706 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.234 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.248 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.930 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.944 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.329 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.364 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 26.759 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 26.545 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 1.034 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.458 |
| SRR2967015 | Control (Tissue:root) | 0.442 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 22.576 |
| SRR9715740 | Leave | 17.034 |
| SRR9715741 | Leave | 21.080 |
| SRR9715739 | Root | 0.311 |
| SRR9715742 | Root | 0.540 |
| SRR9715743 | Root | 0.541 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.872 |
| SRR8749028 | MeJA induced 9h | 2.938 |
| SRR8749029 | MeJA induced 9h | 2.411 |
| SRR8749030 | Uninduced | 1.046 |
| SRR8749031 | Uninduced | 0.794 |
| SRR8749032 | Uninduced | 0.407 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.530 |
| SRR8400027 | Control-Root | 0.833 |