Gene detail information of Glyur000972s00027751.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G26660.1 | 1.00E-66 | myb domain protein 86 |
| NR | XP_003525561.1 | 1.82E-178 | PREDICTED: myb-related protein 330 [Glycine max] |
| Swissprot | tr|Q8LPH6|MYB86_ARATH | 5.00E-80 | Transcription factor MYB86 |
| trEMBL | tr|V7CB91|V7CB91_PHAVU | 1.00E-175 | Uncharacterized protein {ECO:0000313|EMBL:ESW27462.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00972 | 10584 | 12265 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MYB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000972s00027751.1 | PF00249.26 | Myb_DNA-binding | 14 | 61 | 5.20E-14 |
| Glyur000972s00027751.1 | PF00249.26 | Myb_DNA-binding | 67 | 110 | 1.10E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.577 |
| SRR1783600 | control | 0.586 |
| SRR1783602 | moderate drought stress | 0.279 |
| SRR1811619 | moderate drought stress | 0.239 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.525 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.577 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.721 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.677 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.776 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.776 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.109 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.042 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 4.557 |
| SRR2868004 | Drought Stress(Tissue:root) | 3.517 |
| SRR2967015 | Control (Tissue:root) | 2.298 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.036 |
| SRR9715740 | Leave | 0.476 |
| SRR9715741 | Leave | 0.498 |
| SRR9715739 | Root | 0.274 |
| SRR9715742 | Root | 0.576 |
| SRR9715743 | Root | 0.489 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.567 |
| SRR8749028 | MeJA induced 9h | 1.331 |
| SRR8749029 | MeJA induced 9h | 0.540 |
| SRR8749030 | Uninduced | 0.272 |
| SRR8749031 | Uninduced | 0.161 |
| SRR8749032 | Uninduced | 0.268 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 2.001 |
| SRR8400027 | Control-Root | 2.783 |