Gene detail information of Glyur000972s00027755.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G63120.20P-loop containing nucleoside triphosphate hydrolases superfamily protein
NRXP_004515873.10PREDICTED: DEAD-box ATP-dependent RNA helicase 30-like isoform X1 [Cicer arietinum]
COGYP_006409447.11.00E-93DNA/RNA helicase [Alistipes finegoldii DSM 17242]
Swissprottr|Q5N7W4|RH30_ORYSJ0DEAD-box ATP-dependent RNA helicase 30
trEMBLtr|V7CEX5|V7CEX5_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW27466.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold009722549130276-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K12823DDX5, DBP2 EC:3.6.4.13 Spliceosome map03040
Transcriptional misregulation in cancersmap05202
Proteoglycans in cancermap05205


Gene Ontology

molecular_function

GO:0003676  nucleic acid binding

GO:0005524  ATP binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000972s00027755.1PF00270.24DEAD2203903.10E-44
Glyur000972s00027755.1PF00271.26Helicase_C4605368.80E-25


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control20.607
SRR1783600control20.699
SRR1783602moderate drought stress25.235
SRR1811619moderate drought stress24.872

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain21.808
DRR006520Root Summer glycyrrhizin high producing strain21.613
DRR006521Root Winter glycyrrhizin high producing strain107.149
DRR006522Root Winter glycyrrhizin high producing strain104.444
DRR006523Root Summer glycyrrhizin low producing strain29.872
DRR006524Root Summer glycyrrhizin low producing strain30.092
DRR006525Leaf Summer glycyrrhizin high producing strain17.380
DRR006526Leaf Summer glycyrrhizin high producing strain17.170

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)32.846
SRR2868004Drought Stress(Tissue:root)32.102
SRR2967015Control (Tissue:root)40.870

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave18.644
SRR9715740Leave21.915
SRR9715741Leave21.982
SRR9715739Root8.905
SRR9715742Root23.298
SRR9715743Root19.253

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h21.197
SRR8749028MeJA induced 9h29.736
SRR8749029MeJA induced 9h25.457
SRR8749030Uninduced27.370
SRR8749031Uninduced17.845
SRR8749032Uninduced22.414

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root34.886
SRR8400027Control-Root30.414

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved