Gene detail information of Glyur000972s00027769.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G39720.14.00E-66RING-H2 finger C2A
NRXP_007163425.10hypothetical protein PHAVU_001G233700g [Phaseolus vulgaris]
Swissprottr|P0CH30|RING1_GOSHI2.00E-38E3 ubiquitin-protein ligase RING1
trEMBLtr|V7CZ69|V7CZ69_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW35419.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold009728003681229+


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000972s00027769.1PF14369.1zf-RING_37405.20E-16
Glyur000972s00027769.1PF13639.1zf-RING_21932353.50E-13
Glyur000972s00027769.1PF06547.7DUF11172743761.60E-38


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control85.884
SRR1783600control86.332
SRR1783602moderate drought stress67.078
SRR1811619moderate drought stress66.843

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain168.046
DRR006520Root Summer glycyrrhizin high producing strain167.050
DRR006521Root Winter glycyrrhizin high producing strain33.866
DRR006522Root Winter glycyrrhizin high producing strain36.726
DRR006523Root Summer glycyrrhizin low producing strain171.715
DRR006524Root Summer glycyrrhizin low producing strain163.044
DRR006525Leaf Summer glycyrrhizin high producing strain51.516
DRR006526Leaf Summer glycyrrhizin high producing strain48.003

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)45.899
SRR2868004Drought Stress(Tissue:root)68.972
SRR2967015Control (Tissue:root)77.018

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave137.953
SRR9715740Leave122.533
SRR9715741Leave149.356
SRR9715739Root349.009
SRR9715742Root266.436
SRR9715743Root284.845

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h148.751
SRR8749028MeJA induced 9h187.448
SRR8749029MeJA induced 9h157.131
SRR8749030Uninduced142.381
SRR8749031Uninduced122.681
SRR8749032Uninduced126.422

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root68.590
SRR8400027Control-Root86.626

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved