Gene detail information of Glyur000973s00026291.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G40280.1 | 5.00E-125 | Prenyltransferase family protein |
| NR | XP_004489283.1 | 0 | PREDICTED: protein farnesyltransferase subunit beta-like [Cicer arietinum] |
| Swissprot | tr|Q04903|FNTB_PEA | 0 | Protein farnesyltransferase subunit beta |
| trEMBL | tr|I1KCJ9|I1KCJ9_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G19740.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00973 | 914 | 6087 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K05954 | FNTB | EC:2.5.1.58 | Terpenoid backbone biosynthesis | map00900 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000973s00026291.1 | PF13249.1 | Prenyltrans_2 | 155 | 247 | 1.10E-12 |
| Glyur000973s00026291.1 | PF00432.16 | Prenyltrans | 279 | 318 | 8.30E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 15.128 |
| SRR1783600 | control | 15.172 |
| SRR1783602 | moderate drought stress | 20.022 |
| SRR1811619 | moderate drought stress | 20.281 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 20.495 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 20.366 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 40.491 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 39.266 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 23.402 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 24.019 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.943 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 11.176 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 28.511 |
| SRR2868004 | Drought Stress(Tissue:root) | 35.423 |
| SRR2967015 | Control (Tissue:root) | 38.693 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 15.430 |
| SRR9715740 | Leave | 20.412 |
| SRR9715741 | Leave | 19.503 |
| SRR9715739 | Root | 13.715 |
| SRR9715742 | Root | 13.470 |
| SRR9715743 | Root | 13.373 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 16.744 |
| SRR8749028 | MeJA induced 9h | 24.317 |
| SRR8749029 | MeJA induced 9h | 15.051 |
| SRR8749030 | Uninduced | 16.434 |
| SRR8749031 | Uninduced | 9.157 |
| SRR8749032 | Uninduced | 10.016 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 30.961 |
| SRR8400027 | Control-Root | 30.221 |