Gene detail information of Glyur000976s00028348.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G02750.17.00E-40RING/U-box superfamily protein
NRXP_004497437.11.39E-125PREDICTED: uncharacterized protein LOC101509295 [Cicer arietinum]
Swissprottr|Q8GXF8|SHGR9_ARATH8.00E-76E3 ubiquitin-protein ligase SGR9, amyloplastic (Precursor)
trEMBLtr|V7BFY5|V7BFY5_PHAVU9.00E-118Uncharacterized protein {ECO:0000313|EMBL:ESW16495.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold009763883439655+


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000976s00028348.1PF13639.1zf-RING_22052474.10E-13


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.384
SRR1783600control0.345
SRR1783602moderate drought stress0.509
SRR1811619moderate drought stress0.545

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.921
DRR006520Root Summer glycyrrhizin high producing strain1.039
DRR006521Root Winter glycyrrhizin high producing strain0.000
DRR006522Root Winter glycyrrhizin high producing strain0.000
DRR006523Root Summer glycyrrhizin low producing strain0.408
DRR006524Root Summer glycyrrhizin low producing strain0.269
DRR006525Leaf Summer glycyrrhizin high producing strain32.715
DRR006526Leaf Summer glycyrrhizin high producing strain33.694

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)5.092
SRR2868004Drought Stress(Tissue:root)2.628
SRR2967015Control (Tissue:root)2.489

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave21.715
SRR9715740Leave38.687
SRR9715741Leave28.248
SRR9715739Root0.103
SRR9715742Root2.659
SRR9715743Root2.152

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.172
SRR8749028MeJA induced 9h0.318
SRR8749029MeJA induced 9h0.222
SRR8749030Uninduced0.015
SRR8749031Uninduced0.000
SRR8749032Uninduced0.069

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root1.527
SRR8400027Control-Root2.737

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved