Gene detail information of Glyur000986s00028876.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G29630.30thiaminC
NRXP_004500235.10PREDICTED: phosphomethylpyrimidine synthase, chloroplastic-like [Cicer arietinum]
COGYP_003135247.10thiamine biosynthesis protein ThiC [Saccharomonospora viridis DSM 43017]
Swissprottr|O82392|THIC_ARATH0Phosphomethylpyrimidine synthase, chloroplastic (Precursor)
trEMBLtr|A0A072UWI1|A0A072UWI1_MEDTR0Thiamine biosynthesis protein ThiC {ECO:0000313|EMBL:KEH34199.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold009865116155730-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K03147thiC EC:4.1.99.17 Thiamine metabolism map00730


Gene Ontology

biological_process

GO:0009228  thiamine biosynthetic process


molecular_function

GO:0051536  iron-sulfur cluster binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000986s00028876.1PF13667.1ThiC-associated961612.90E-07
Glyur000986s00028876.1PF01964.13ThiC1685907.20E-197


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control52.289
SRR1783600control52.461
SRR1783602moderate drought stress77.479
SRR1811619moderate drought stress77.186

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain200.751
DRR006520Root Summer glycyrrhizin high producing strain197.239
DRR006521Root Winter glycyrrhizin high producing strain111.726
DRR006522Root Winter glycyrrhizin high producing strain108.778
DRR006523Root Summer glycyrrhizin low producing strain157.170
DRR006524Root Summer glycyrrhizin low producing strain156.363
DRR006525Leaf Summer glycyrrhizin high producing strain330.845
DRR006526Leaf Summer glycyrrhizin high producing strain328.408

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)12.085
SRR2868004Drought Stress(Tissue:root)6.325
SRR2967015Control (Tissue:root)37.362

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave14.578
SRR9715740Leave23.955
SRR9715741Leave13.388
SRR9715739Root16.060
SRR9715742Root29.307
SRR9715743Root27.930

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h6.993
SRR8749028MeJA induced 9h14.840
SRR8749029MeJA induced 9h5.963
SRR8749030Uninduced7.590
SRR8749031Uninduced2.328
SRR8749032Uninduced3.199

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root59.121
SRR8400027Control-Root73.040

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved