Gene detail

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Gene detail information of Glyur000986s00028880.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G47000.1	0	Glycosyl hydrolase family protein
NR	XP_004500232.1	0	PREDICTED: lysosomal beta glucosidase-like [Cicer arietinum]
COG	YP_003265703.1	0	glycoside hydrolase [Haliangium ochraceum DSM 14365]
Swissprot	tr\|Q9FGY1\|BXL1_ARATH	3.00E-34	Beta-D-xylosidase 1 (Precursor)
trEMBL	tr\|A0A072UWG8\|A0A072UWG8_MEDTR	0	Glycoside hydrolase family 3 protein {ECO:0000313\|EMBL:KEH34189.1}

Sequence

Transcript Sequence

>Glyur000986s00028880.1
TTGACTCACAAGTAGATCCTGTCAGCTGTAACTACCTTACCTCCAATTTTTTTGCGTTTATAATATAATAAACTAATAAAGAGGAACGCCATTCATTCATTCGTTCATTCATTCATCTCTAGTCTCTAGATAAACGTTACACAGTACACACACCAAACAGGCAACAAAGTCCAAAAGTCCTTTCTAAACGTTGATCGTTTCAATCAAGAAGCCATGGATTGCTTGTACAAGAATCCCAAGCAACCCATTGAAGCTCGTGTCAATGACCTTCTTTCCCGCATGACTCTCAAGGAGAAGATTGCTCAGATGACCCAAATCGAACGCACTGTTGCCACCCCTTCTGTCATCACAGATCTCTCCATTGGGAGCATACTCAGTGCTGGAGGCAGTATGCCTTTTGAAAATGCAATGTCGTCAGATTGGGCTGATATGGTGGATGCCTTTCAAAAATCAGCTCTAGAGTCCCGACTGGGAATACCTCTCATCTATGGGATTGATGCAGTTCATGGTAATAACACTGTCTACGGTGCTACCATATTTCCTCACAATGTTGGCCTCGGAGCTACTAGAGATGCTGATTTAGCTCAAAGAATTGGAGCTGCTACGGCACTTGAAGTCAAAGCAAGTGGAATTCACTATAATTTTGCTCCNTGTGTGGCGGTTTGCAAAGATCCTAGATGGGGAAGATGTTATGAGTGTTACAGTGAAGACACTGAAATAGTCAGAAAGATGACTTCCATTGTTTCAGGTTTGCAAGGCCAGCCACCACAAGGACATGAGCATGGATACCCTTTTGTGGCTGGAAGGAATAATGTTATTGCATGTGCCAAGCATTTTGTTGGAGATGGAGGTACTTATAAGGGTGCGAATGAGGGAAATACTATATTGTCCTATGAAGACTTAGAGAGAATACACATGGCACCTTACTTAGACTGCATTGCCCAGGGAGTTTCAACCATTATGGCATCCTATTCTAGCTGGAATGAACGCAAACTCCATGCTGACCATTTTCTTCTAACCGAAATCTTGAAAGAAAAGCTAGGTTTTAAGGGTTTTGTGATTTCTGACTGGGAGGGACTTGACCGACTTTGCAAACCTCATGGGTCAGATTATCGGTACTGCATCTCCTCTGCNGTCAATGCTGGAATTGACATGGTGATGGTGCCTTTAAGATACGAACTATTCATTGAAGAAATGACCTCTTTAGTTGAATCAGGGGAAATACCAATGAGCAGAATTGATGATGCTGTTGAGCGAATTTTGAGAGTAAAGTTTGCTGCTGGTCTTTTTGAATTTCCGTTAAGTGACAGGTCTTTGCTAGATACAGTTGGTAGCAAGCCACATAGAGATCTAGCACGTGAAGCAGTTCGAAAGTCCTTGGTTCTGTTGAAAAATGGAAAAGATACTAGCAAACCTTTTCTTCCATTGAACAGGAATGCTAAGAGAATTCTTGTTACTGGAACTCACGCCGATGATCTTGGATATCAATGTGGAGGTTGGACTAAAACTTGGTATGGCTGTAGTGGGCGNATTACAGTTGGGACAACAATCTTGGATGCTGTTAAGGCAACTGTGGGGGCTGAAACAGAAGTTATTTACCAGAAGTATCCATCAAAAGACNCCGTAGAACGCGATGAATTCTCATTTGCAATTGTAGCTGTTGGGGAAGCTCCTTANGCCGAGACACTGGGTGACAATTCAGAGCTCACAATCCCTTTCAATGGAGCTGATATCACAAGCTTAGTTGCCGACAAAATCCCAACGCTTGTTATCCTCATATCTGGAAGACCTTTAGTCTTNGAGCCATGGCTTTTGGAGAAGATAGATGCTCTTGTTGCTGCTTGGTTGCCGGGTACTGAAGGAGAGGGAATCACGGATGTTATATTTGGCGGTTATGACTTCCAAGGTCAACTCCCAGTGACTTGGTTCAGAAGAGTGGAACAGCTTGATCAGCCAACAACTGATGGACTTACTTCATGTGAACCTTTATTTCCTCTTGGTTTTGGACTAAAGTACATGAATAAGTGCTAAAATATCCAAAGATAGCCCAAGGACCAAAATAGTAAATAAGCAGTTTGTGAATAGTATTTGCCCTCCATATCAGTTACATATTAGAAGAAAAATAATNCTTGGACACCTAAATGCTATTCTACANCTAGAGAGAGATAGGTATAAAAGAGAGATAAGTGATAGATGTGATAGATAAGTGATGTGATAAGTAGAGAGAGATAGAAAGAGATAGAGGTGTTGGATGAGTGTTGAAATTATGTGGGTGTCTAAATATCATGGTTCTAGAAGAATCCTTACACAATGAAGGCATATTCATCGTAAATTAGAAAGTACTAATATAGTACTTGATCGNGTGAGGGTTAGACACTTAGGCCCACACCCACTAAATTTTTATCGTTAAATCAAAAGTTCATTAATTTAATCTGATTTTGTTTTTTAACAATAACATATCAGACATGCTGCTTNAGGCGAATTTCTTGTTTGGACTAGCTTGAGTATCTTCGAATCTAAAGATTTACATCAGCTGCCCAATTCTAAAGAATGACTTTTCGAAATTCTTGNTAAGTTATAATATTGCACACACAGGGAAAAATATTTTAGTGACTCACACTTGGTTGATGTCAAAAATATTGTTCCAACATAAACATTTTTCTATTTTTCCTGTTCTGTGGTGTGACAT

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00986	78391	83532	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH3

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K05349	bglX	EC:3.2.1.21	Starch and sucrose metabolism	map00500
			Cyanoamino acid metabolism	map00460
			Phenylpropanoid biosynthesis	map00940

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000986s00028880.1	PF00933.16	Glyco_hydro_3	24	352	2.60E-84
Glyur000986s00028880.1	PF01915.17	Glyco_hydro_3_C	389	601	4.30E-38

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.153
SRR1783600	control	6.044
SRR1783602	moderate drought stress	5.853
SRR1811619	moderate drought stress	5.843

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.662
DRR006520	Root Summer glycyrrhizin high producing strain	2.612
DRR006521	Root Winter glycyrrhizin high producing strain	0.453
DRR006522	Root Winter glycyrrhizin high producing strain	0.364
DRR006523	Root Summer glycyrrhizin low producing strain	2.237
DRR006524	Root Summer glycyrrhizin low producing strain	2.141
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.534
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.320

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	11.753
SRR2868004	Drought Stress(Tissue:root)	12.268
SRR2967015	Control (Tissue:root)	11.412

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	12.565
SRR9715740	Leave	14.608
SRR9715741	Leave	12.983
SRR9715739	Root	1.006
SRR9715742	Root	2.861
SRR9715743	Root	2.472

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.145
SRR8749028	MeJA induced 9h	0.050
SRR8749029	MeJA induced 9h	0.113
SRR8749030	Uninduced	0.024
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	6.099
SRR8400027	Control-Root	9.765