Gene detail information of Glyur000987s00026408.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G26640.103-ketoacyl-CoA synthase 11
NRXP_003524525.10PREDICTED: 3-ketoacyl-CoA synthase 11-like [Glycine max]
COGNP_285649.16.00E-18chalcone synthase [Deinococcus radiodurans R1]
Swissprottr|O48780|KCS11_ARATH03-ketoacyl-CoA synthase 11
trEMBLtr|I1K1C8|I1K1C8_SOYBN03-ketoacyl-CoA synthase {ECO:0000256|PIRNR:PIRNR036417}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold009873052433543+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K15397KCS EC:2.3.1.199 Fatty acid elongation map00062


Gene Ontology

biological_process

GO:0006633  fatty acid biosynthetic process

GO:0008152  metabolic process

GO:0008610  lipid biosynthetic process


cellular_component

GO:0016020  membrane


molecular_function

GO:0003824  catalytic activity

GO:0016747  transferase activity, transferring acyl groups other than amino-acyl groups

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000987s00026408.1PF08392.7FAE1_CUT1_RppA1334226.20E-145
Glyur000987s00026408.1PF08541.5ACP_syn_III_C4395194.40E-10


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control35.619
SRR1783600control35.805
SRR1783602moderate drought stress22.328
SRR1811619moderate drought stress22.118

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain28.184
DRR006520Root Summer glycyrrhizin high producing strain27.513
DRR006521Root Winter glycyrrhizin high producing strain2.600
DRR006522Root Winter glycyrrhizin high producing strain2.512
DRR006523Root Summer glycyrrhizin low producing strain20.009
DRR006524Root Summer glycyrrhizin low producing strain20.893
DRR006525Leaf Summer glycyrrhizin high producing strain11.060
DRR006526Leaf Summer glycyrrhizin high producing strain10.858

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)46.240
SRR2868004Drought Stress(Tissue:root)31.959
SRR2967015Control (Tissue:root)27.194

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave29.639
SRR9715740Leave24.981
SRR9715741Leave24.224
SRR9715739Root41.596
SRR9715742Root60.584
SRR9715743Root56.762

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h19.528
SRR8749028MeJA induced 9h10.714
SRR8749029MeJA induced 9h10.199
SRR8749030Uninduced4.623
SRR8749031Uninduced1.517
SRR8749032Uninduced2.607

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root25.770
SRR8400027Control-Root25.311

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved