Gene detail information of Glyur000987s00026412.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G11020.1 | 3.00E-125 | RING/FYVE/PHD zinc finger superfamily protein |
| NR | XP_007154949.1 | 0 | hypothetical protein PHAVU_003G160700g [Phaseolus vulgaris] |
| Swissprot | tr|F4JKK0|SUD1_ARATH | 4.00E-06 | Probable E3 ubiquitin ligase SUD1 |
| trEMBL | tr|V7CC66|V7CC66_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW26943.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00987 | 45246 | 49346 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000987s00026412.1 | PF12906.2 | RINGv | 52 | 102 | 6.80E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 23.658 |
| SRR1783600 | control | 23.818 |
| SRR1783602 | moderate drought stress | 23.106 |
| SRR1811619 | moderate drought stress | 22.915 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 29.886 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 29.829 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 24.843 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 24.099 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 29.763 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 29.157 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 14.933 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 15.259 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 42.810 |
| SRR2868004 | Drought Stress(Tissue:root) | 56.338 |
| SRR2967015 | Control (Tissue:root) | 58.393 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 36.650 |
| SRR9715740 | Leave | 35.607 |
| SRR9715741 | Leave | 50.918 |
| SRR9715739 | Root | 25.621 |
| SRR9715742 | Root | 24.166 |
| SRR9715743 | Root | 25.207 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 15.579 |
| SRR8749028 | MeJA induced 9h | 21.555 |
| SRR8749029 | MeJA induced 9h | 14.140 |
| SRR8749030 | Uninduced | 19.545 |
| SRR8749031 | Uninduced | 21.884 |
| SRR8749032 | Uninduced | 14.297 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 36.062 |
| SRR8400027 | Control-Root | 36.269 |