Gene detail information of Glyur000988s00029116.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G56180.1 | 0 | actin-related protein 8 |
| NR | XP_004499695.1 | 0 | PREDICTED: actin-related protein 8-like [Cicer arietinum] |
| COG | YP_003266114.1 | 2.00E-19 | actin/actin family protein [Haliangium ochraceum DSM 14365] |
| Swissprot | tr|Q9FKT0|ARP8_ARATH | 0 | Actin-related protein 8 |
| trEMBL | tr|G7J0F5|G7J0F5_MEDTR | 0 | Macronuclear actin {ECO:0000313|EMBL:AES68560.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00988 | 69878 | 76425 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000988s00029116.1 | PF00646.28 | F-box | 34 | 78 | 3.20E-08 |
| Glyur000988s00029116.1 | PF00022.14 | Actin | 175 | 456 | 1.20E-28 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 13.322 |
| SRR1783600 | control | 13.426 |
| SRR1783602 | moderate drought stress | 19.056 |
| SRR1811619 | moderate drought stress | 19.248 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 15.213 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 15.066 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 43.186 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 42.260 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 18.719 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 18.454 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 19.423 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 19.512 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 28.181 |
| SRR2868004 | Drought Stress(Tissue:root) | 24.199 |
| SRR2967015 | Control (Tissue:root) | 24.706 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 22.582 |
| SRR9715740 | Leave | 26.124 |
| SRR9715741 | Leave | 24.766 |
| SRR9715739 | Root | 6.580 |
| SRR9715742 | Root | 15.228 |
| SRR9715743 | Root | 12.063 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 32.156 |
| SRR8749028 | MeJA induced 9h | 49.912 |
| SRR8749029 | MeJA induced 9h | 31.389 |
| SRR8749030 | Uninduced | 43.560 |
| SRR8749031 | Uninduced | 21.712 |
| SRR8749032 | Uninduced | 31.558 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 37.078 |
| SRR8400027 | Control-Root | 29.656 |