Gene detail information of Glyur000988s00029117.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G55680.10Transducin/WD40 repeat-like superfamily protein
NRXP_004499693.10PREDICTED: uncharacterized WD repeat-containing protein C2A9.03-like isoform X1 [Cicer arietinum]
COGNP_484291.15.00E-17hypothetical protein alr0247, partial [Nostoc sp. PCC 7120]
Swissprottr|O22212|PRP4L_ARATH1.00E-07U4/U6 small nuclear ribonucleoprotein PRP4-like protein
trEMBLtr|G7J0E1|G7J0E1_MEDTR0Transducin/WD40 repeat protein {ECO:0000313|EMBL:AES68546.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold009888125586252+


Gene family

Gene familysubfamily
Ubiquitin FamilyDWD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000988s00029117.1PF00400.27WD403133462.70E-05


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control23.338
SRR1783600control23.616
SRR1783602moderate drought stress26.955
SRR1811619moderate drought stress27.107

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain55.297
DRR006520Root Summer glycyrrhizin high producing strain54.654
DRR006521Root Winter glycyrrhizin high producing strain51.171
DRR006522Root Winter glycyrrhizin high producing strain49.656
DRR006523Root Summer glycyrrhizin low producing strain50.066
DRR006524Root Summer glycyrrhizin low producing strain49.508
DRR006525Leaf Summer glycyrrhizin high producing strain33.998
DRR006526Leaf Summer glycyrrhizin high producing strain33.913

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)52.202
SRR2868004Drought Stress(Tissue:root)60.157
SRR2967015Control (Tissue:root)54.012

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave34.153
SRR9715740Leave41.205
SRR9715741Leave51.343
SRR9715739Root9.365
SRR9715742Root29.498
SRR9715743Root26.171

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h40.006
SRR8749028MeJA induced 9h59.629
SRR8749029MeJA induced 9h38.096
SRR8749030Uninduced49.003
SRR8749031Uninduced49.145
SRR8749032Uninduced46.768

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root48.756
SRR8400027Control-Root49.076

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved