Gene detail information of Glyur000988s00029119.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G13350.1 | 3.00E-74 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain |
| NR | XP_004499691.1 | 1.41E-150 | PREDICTED: high mobility group B protein 10-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q9LTT3|HMG10_ARATH | 1.00E-90 | High mobility group B protein 10 |
| trEMBL | tr|I1KFV6|I1KFV6_SOYBN | 6.00E-122 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G48010.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00988 | 96686 | 99323 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | ARID |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000988s00029119.1 | PF01388.16 | ARID | 53 | 139 | 1.60E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.248 |
| SRR1783600 | control | 7.926 |
| SRR1783602 | moderate drought stress | 10.046 |
| SRR1811619 | moderate drought stress | 10.029 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 13.514 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 14.912 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 17.238 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 17.198 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.629 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.828 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.143 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.736 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 14.402 |
| SRR2868004 | Drought Stress(Tissue:root) | 16.059 |
| SRR2967015 | Control (Tissue:root) | 17.016 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 9.696 |
| SRR9715740 | Leave | 14.723 |
| SRR9715741 | Leave | 15.282 |
| SRR9715739 | Root | 2.361 |
| SRR9715742 | Root | 7.180 |
| SRR9715743 | Root | 6.016 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 37.098 |
| SRR8749028 | MeJA induced 9h | 26.902 |
| SRR8749029 | MeJA induced 9h | 37.645 |
| SRR8749030 | Uninduced | 24.904 |
| SRR8749031 | Uninduced | 20.268 |
| SRR8749032 | Uninduced | 28.834 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 23.291 |
| SRR8400027 | Control-Root | 20.533 |