Gene detail

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Gene detail information of Glyur000994s00025823.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G61210.1	4.00E-153	Transducin/WD40 repeat-like superfamily protein
NR	XP_003541552.1	0	PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Glycine max]
COG	YP_001275252.1	3.00E-36	WD-40 repeat-containing protein [Roseiflexus sp. RS-1]
Swissprot	tr\|Q8H0T9\|KTNB1_ARATH	1.00E-128	Katanin p80 WD40 repeat-containing subunit B1 homolog {ECO:0000255\|HAMAP-Rule:MF_03022}
trEMBL	tr\|I1MEC6\|I1MEC6_SOYBN	0	Katanin p80 WD40 repeat-containing subunit B1 homolog {ECO:0000256\|HAMAP-Rule:MF_03022}

Sequence

Transcript Sequence

>Glyur000994s00025823.1
ATGCTTTCTGATTCCCCCGTTTTTAAGGTTATTGTTTCTAATAGCTGTGCTATAACAGCTTTCAAGAGCCTGTGTGGTCATACAAGTCCAGTAGAATCTGTGGCTTTTGACTTAGCAGAAGTGTTGGTTCTTGCTGGAGCATCGTCAGGGGTAATAAAGCTTTGGGATTGGGAAGAAGCAAAGATGGTTCGCACTCTTACTGGACACAAATCAAATTGTACTGCTGTTGAGTTTCACCCGTTTGGTGAGTTTTTTGCATCTGGTTCCTTGGACACTAATCTAAGGATTTGGGATATCCGGAAAAAAGGATGCATTCATACATACAAGGGTCATAGCCAGGGCATCAACACTATCAAATTCACTCCANATGGTCGTTGGGTTGTTTCTGGTGGATTTGATAATACTGTGAAGGTCTGGGATCTAACAGGTGGAAAGCTCTTGCATGACTTCCAGCTCCATGAAGGACACATTAGGTCCCTAGATTTCCACCCTCTTGAGTTTCTTCTCGCTACAGGTTCAGCTGACAGAACCGTGAAATTTTGGGATCTAGAAACCTTAAAACTGATTGGATCTACCAGACATGAGGTTGCAGGGGTACGCTCAATAGCTTTTCATCCTGATGGGCAGACTCTATTTGCTGGACTTGAGGATAGTTTGAAGGTGTATTCATGGGAACCTGTTATATGTCGTGATGATGTTGATATGGGATGGACAACTCTTGGTGACCTCTGTATTCATGATGGGAAGCTTTTGGGTTGCTCATTTCATCAGAATTCTGTTGGAGTCTGGGTGGCAGATATATCATTTATTGAGCCATATGGTGGTGGCTTGGAAACCGGGAAAAATGAAGGCATGGAGCAGAAGCTTAGTCTCCATGGAAATCAAATGGAGAAAGTAGAGGCTGGTGTGGGACTGACTTCTGGGCTGTGTCCTGACAATGAGATAAAGAACATATATATAGACTCTTTTGGAGGGAATCCTGTTGCTTTACAGAGATCCAAGTCTTATAATTCTCCAAAAGTAGATCTCCAGGAATCCAAGGAATTTCTGAAGTGCAATCCTGCAATAGGAGTTAATGCAAAACCAAATGAACAAGCGCTTAAAAAGTCTGACATTCTGCCAAACATTTTACCTCAGGACATTCCTAATGGTAAGGTCTCAGCAAAATCTGGAAAAGAAATTATCGCCTTTTCGAAGACAAAACCCAGGATGTTGCTTAAGCCAGCACATTTTAGGAGAGCATCCACCGGAATATTTGATGTTGATGGGTTTTCGTCTGATGTGGATTCTGGAAATACTATAAGTAAATCAGACAGCGTAGAAGATCCTAGCTTCCAAATGAAGCTTGGATCCCAGGATGAAGTCAAAGAATCTTGTGAGGATAAACATCCTATCAAGAGTGTTACAGAGAAGTTTGAAAAGACTTTAACTCCAGACAGATTTTCTGACCAAGAGAAATGTGATCAATCCTCTCGTTGTAGCAAAGAGATTAGTCCAGTTAAATATGTCAATGGAGTTGCTGTTGTACATGGAAGGATCCGTTCTTTGGTCGAGAGGTTTGAAAGAAGGGAAAGAACTCCCATCAATGAGGATCAAACCAATGCAACCCTTACCACAACATATGAAAAGAGGGAAAAAATTCTCACTGAAGATCAAAATAATGCATCTCCCATCCTTGCCACAATATCTGAGAAGAGGGAAAGAATTCTTTTCAATGGAGATCCAAAAAATACACCCTCAATTCCCCACACAATATGTGAAACAGACAAGTCTCCCAACGTCCTGAAAGTTGAGCCTCAAGTTTCTGAAAAGGATTCGAACTCTGCAAATGAAGCAGAAATAATTGGAGGTCTGATGCAAACTCATGAAGTAACATTAAGTAGTCTCCGCTCCCGTTTGACAAAATTACAGGTAGTGCGACATTTTTGGGAACGGAATGATAGTAAAGGTGCCATCAGTGCTTTGAGAAAGCTGCCTGATCAATCTGTTCAAGCTGATGTTATCAGTGTCCTTGTTGAGAAGATGGAGATTCTCACCCTAGATTTATTTTCTTGCTTACTTCCTGTGCTGACTAGTTTACTGGATAGCAAGATAGAAAGACATGTGAAGGTGTCATTGGATATGTTGTTAAAGCTTGTAGCAGTTTTTGGTCCAACAATACGTTCAACCATTTCAGCACCTCCCCCTGTCAGGGTTGATCTACATGCAGAGCAAAGGAGAGAATGCTGCAACCAATGCTTTATGCAACTGCAAAAGATCCAAATGATTCTTCCAATATTAATACGGAGGGGTGGCTTATTGGCCAAGTCTGCCCAAGAACTAAATTTAGTTCTTCAACAATCCTAACCAAAGATGTTCCCTTTATGAATTTTAGCCAACTTATGAATGAGAGTGACTAAGCTTAACATGCACTTTAGCAGGATTATGTACAAAACATGAAGCCTTCATTGTTGGATTATTTTCATTGCAGCCAACAATTTTTGTCTGATGGTTTGCACTATTAGCAATTTAGCAGTCATCATCGGCTTTGTTAATGACAGAGAATTATGACAAATGAGATGAGATGTGTGTGAGATAGATCGCTGGATGCATTGTTCTACCTTATGTTTAGATGCTTCAAGCTGGAAGTAGACATCTAAGGATCTCTCGGTCTTCAACAGTTCTCAAAGCTTGTGTTCCTAACATCAATATGTAAAATTGTAAATCTATCATTACAAACTCCTAGCAGGTCTTTAAAATGGACTCATATAGAACATTACGAAAAGTTATTATGGGATAATATATTATGAATAGCATTGAACTACAAGTCTTGAGTGTGTAAATATCATTTTC

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00994	16830	24698	-

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0051013 microtubule severing

cellular_component GO:0008352 katanin complex molecular_function GO:0005515 protein binding GO:0008017 microtubule binding "

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000994s00025823.1	PF00400.27	WD40	22	56	0.00063
Glyur000994s00025823.1	PF00400.27	WD40	62	98	1.50E-10
Glyur000994s00025823.1	PF00400.27	WD40	104	140	1.20E-11
Glyur000994s00025823.1	PF00400.27	WD40	144	182	2.20E-09
Glyur000994s00025823.1	PF00400.27	WD40	197	217	0.12
Glyur000994s00025823.1	PF13925.1	Katanin_con80	619	779	1.00E-49

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.770
SRR1783600	control	2.768
SRR1783602	moderate drought stress	2.423
SRR1811619	moderate drought stress	2.422

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.409
DRR006520	Root Summer glycyrrhizin high producing strain	5.259
DRR006521	Root Winter glycyrrhizin high producing strain	0.197
DRR006522	Root Winter glycyrrhizin high producing strain	0.226
DRR006523	Root Summer glycyrrhizin low producing strain	3.728
DRR006524	Root Summer glycyrrhizin low producing strain	3.644
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.096
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.958

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	7.784
SRR2868004	Drought Stress(Tissue:root)	7.346
SRR2967015	Control (Tissue:root)	6.864

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.638
SRR9715740	Leave	0.182
SRR9715741	Leave	0.127
SRR9715739	Root	0.233
SRR9715742	Root	1.460
SRR9715743	Root	1.303

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.126
SRR8749028	MeJA induced 9h	1.912
SRR8749029	MeJA induced 9h	1.153
SRR8749030	Uninduced	0.960
SRR8749031	Uninduced	1.058
SRR8749032	Uninduced	0.641

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	9.873
SRR8400027	Control-Root	11.798