Gene detail information of Glyur000994s00025830.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G61140.30SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related
NRKHN46324.10Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2 [Glycine soja]
COGYP_003266234.12.00E-36SNF2-like protein [Haliangium ochraceum DSM 14365]
Swissprottr|Q9FNI6|SM3L2_ARATH7.00E-64Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2
trEMBLtr|K7M0F5|K7M0F5_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G25310.4}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold009945953565992+


Gene family

Gene familysubfamily
Transcription Factors FamilySNF2
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

molecular_function

GO:0003677  DNA binding

GO:0005515  protein binding

GO:0005524  ATP binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000994s00025830.1PF00176.18SNF2_N4288211.30E-73
Glyur000994s00025830.1PF00271.26Helicase_C105211291.20E-10


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control1.219
SRR1783600control1.230
SRR1783602moderate drought stress1.967
SRR1811619moderate drought stress1.876

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain1.333
DRR006520Root Summer glycyrrhizin high producing strain1.323
DRR006521Root Winter glycyrrhizin high producing strain6.968
DRR006522Root Winter glycyrrhizin high producing strain6.745
DRR006523Root Summer glycyrrhizin low producing strain2.626
DRR006524Root Summer glycyrrhizin low producing strain2.646
DRR006525Leaf Summer glycyrrhizin high producing strain4.033
DRR006526Leaf Summer glycyrrhizin high producing strain3.973

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)10.455
SRR2868004Drought Stress(Tissue:root)15.557
SRR2967015Control (Tissue:root)16.148

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave12.948
SRR9715740Leave7.498
SRR9715741Leave15.678
SRR9715739Root0.741
SRR9715742Root3.363
SRR9715743Root3.603

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h44.738
SRR8749028MeJA induced 9h105.248
SRR8749029MeJA induced 9h88.625
SRR8749030Uninduced28.979
SRR8749031Uninduced155.608
SRR8749032Uninduced104.605

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root4.640
SRR8400027Control-Root4.723

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved