Gene detail information of Glyur000998s00023002.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G56680.10Class II aminoacyl-tRNA and biotin synthetases superfamily protein
NRXP_004503515.10PREDICTED: asparagine--tRNA ligase, cytoplasmic 1-like [Cicer arietinum]
COGYP_004509817.15.00E-158asparaginyl-tRNA synthetase [Porphyromonas gingivalis TDC60]
Swissprottr|Q9SW96|SYNC1_ARATH0Asparagine--tRNA ligase, cytoplasmic 1
trEMBLtr|V7CQ72|V7CQ72_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW32249.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold009987479878550-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01893NARS, asnS EC:6.1.1.22 Aminoacyl-tRNA biosynthesis map00970


Gene Ontology

biological_process

GO:0006418  tRNA aminoacylation for protein translation

GO:0006421  asparaginyl-tRNA aminoacylation


cellular_component

GO:0005737  cytoplasm


molecular_function

GO:0000166  nucleotide binding

GO:0003676  nucleic acid binding

GO:0004812  aminoacyl-tRNA ligase activity

GO:0004816  asparagine-tRNA ligase activity

GO:0005524  ATP binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000998s00023002.1PF01336.20tRNA_anti-codon1252065.90E-06
Glyur000998s00023002.1PF00152.15tRNA-synt_22272951.80E-10
Glyur000998s00023002.1PF00152.15tRNA-synt_23726401.40E-49


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control50.211
SRR1783600control50.577
SRR1783602moderate drought stress71.867
SRR1811619moderate drought stress71.837

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain61.890
DRR006520Root Summer glycyrrhizin high producing strain61.562
DRR006521Root Winter glycyrrhizin high producing strain48.421
DRR006522Root Winter glycyrrhizin high producing strain47.116
DRR006523Root Summer glycyrrhizin low producing strain104.987
DRR006524Root Summer glycyrrhizin low producing strain104.501
DRR006525Leaf Summer glycyrrhizin high producing strain31.162
DRR006526Leaf Summer glycyrrhizin high producing strain30.610

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)124.009
SRR2868004Drought Stress(Tissue:root)109.272
SRR2967015Control (Tissue:root)114.030

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave85.773
SRR9715740Leave78.097
SRR9715741Leave82.412
SRR9715739Root74.596
SRR9715742Root115.014
SRR9715743Root112.049

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h132.626
SRR8749028MeJA induced 9h81.669
SRR8749029MeJA induced 9h90.255
SRR8749030Uninduced38.535
SRR8749031Uninduced37.199
SRR8749032Uninduced44.616

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root95.146
SRR8400027Control-Root92.137

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved