Gene detail information of Glyur000998s00023003.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G19810.14.00E-92CCCH-type zinc finger family protein
NRXP_004503514.10PREDICTED: zinc finger CCCH domain-containing protein 20-like [Cicer arietinum]
Swissprottr|Q9M0G2|C3H49_ARATH7.00E-126Zinc finger CCCH domain-containing protein 49
trEMBLtr|E1U3U6|E1U3U6_CICAR0Zinc finger protein ZF3 {ECO:0000313|EMBL:ACO54858.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold009988528486462-


Gene family

Gene familysubfamily
Transcription Factors FamilyC3H


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0046872  metal ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000998s00023003.1PF00642.19zf-CCCH1341543.90E-05


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control134.540
SRR1783600control135.971
SRR1783602moderate drought stress210.672
SRR1811619moderate drought stress209.621

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain167.394
DRR006520Root Summer glycyrrhizin high producing strain165.039
DRR006521Root Winter glycyrrhizin high producing strain196.552
DRR006522Root Winter glycyrrhizin high producing strain194.719
DRR006523Root Summer glycyrrhizin low producing strain102.643
DRR006524Root Summer glycyrrhizin low producing strain103.944
DRR006525Leaf Summer glycyrrhizin high producing strain30.192
DRR006526Leaf Summer glycyrrhizin high producing strain30.448

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)50.418
SRR2868004Drought Stress(Tissue:root)135.487
SRR2967015Control (Tissue:root)238.440

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave33.050
SRR9715740Leave16.491
SRR9715741Leave23.181
SRR9715739Root295.859
SRR9715742Root162.470
SRR9715743Root204.965

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h366.383
SRR8749028MeJA induced 9h880.626
SRR8749029MeJA induced 9h512.418
SRR8749030Uninduced8.674
SRR8749031Uninduced137.547
SRR8749032Uninduced421.561

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root95.849
SRR8400027Control-Root110.212

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved