Gene detail information of Glyur001001s00027979.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G32890.11.00E-30GATA transcription factor 9
NRAES75228.23.76E-85GATA type zinc finger transcription factor family protein [Medicago truncatula]
Swissprottr|O82632|GATA9_ARATH1.00E-40GATA transcription factor 9
trEMBLtr|G7KQ55|G7KQ55_MEDTR1.00E-85GATA type zinc finger transcription factor family protein {ECO:0000313|EMBL:AES75228.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold010013130833132-


Gene family

Gene familysubfamily
Transcription Factors FamilyC2C2-GATA


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006355  regulation of transcription, DNA-templated


molecular_function

GO:0003700  transcription factor activity, sequence-specific DNA binding

GO:0008270  zinc ion binding

GO:0043565  sequence-specific DNA binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001001s00027979.1PF00320.22GATA1631972.60E-14


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control33.516
SRR1783600control33.586
SRR1783602moderate drought stress31.020
SRR1811619moderate drought stress31.202

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain33.320
DRR006520Root Summer glycyrrhizin high producing strain32.451
DRR006521Root Winter glycyrrhizin high producing strain0.491
DRR006522Root Winter glycyrrhizin high producing strain0.559
DRR006523Root Summer glycyrrhizin low producing strain6.770
DRR006524Root Summer glycyrrhizin low producing strain6.543
DRR006525Leaf Summer glycyrrhizin high producing strain3.262
DRR006526Leaf Summer glycyrrhizin high producing strain3.060

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)8.321
SRR2868004Drought Stress(Tissue:root)6.434
SRR2967015Control (Tissue:root)8.341

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave1.915
SRR9715740Leave0.449
SRR9715741Leave0.590
SRR9715739Root3.816
SRR9715742Root6.210
SRR9715743Root6.998

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h1.383
SRR8749028MeJA induced 9h0.657
SRR8749029MeJA induced 9h0.422
SRR8749030Uninduced0.943
SRR8749031Uninduced1.364
SRR8749032Uninduced2.519

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root10.363
SRR8400027Control-Root16.511

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved