Gene detail information of Glyur001001s00027991.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G18170.10glutamate dehydrogenase 1
NRXP_007151845.10hypothetical protein PHAVU_004G080200g [Phaseolus vulgaris]
COGYP_634010.18.00E-160glutamate dehydrogenase [Myxococcus xanthus DK 1622]
Swissprottr|Q43314|DHE1_ARATH0Glutamate dehydrogenase 1
trEMBLtr|V7C136|V7C136_PHAVU0Glutamate dehydrogenase {ECO:0000256|PIRNR:PIRNR000185}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold010018609390953-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00261GLUD1_2, gdhA EC:1.4.1.3 Carbon metabolism map01200
Nitrogen metabolismmap00910
Alanine, aspartate and glutamate metabolismmap00250
Arginine biosynthesismap00220
D-Glutamine and D-glutamate metabolismmap00471
Proximal tubule bicarbonate reclamationmap04964


Gene Ontology

biological_process

GO:0006520  cellular amino acid metabolic process

GO:0055114  oxidation-reduction process


molecular_function

GO:0016491  oxidoreductase activity

GO:0016639  oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001001s00027991.1PF02812.13ELFV_dehydrog_N91338.40E-46
Glyur001001s00027991.1PF00208.16ELFV_dehydrog1493813.10E-75


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.030
SRR1783600control0.031
SRR1783602moderate drought stress0.428
SRR1811619moderate drought stress0.372

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.000
DRR006520Root Summer glycyrrhizin high producing strain0.000
DRR006521Root Winter glycyrrhizin high producing strain0.000
DRR006522Root Winter glycyrrhizin high producing strain0.000
DRR006523Root Summer glycyrrhizin low producing strain0.000
DRR006524Root Summer glycyrrhizin low producing strain0.000
DRR006525Leaf Summer glycyrrhizin high producing strain0.186
DRR006526Leaf Summer glycyrrhizin high producing strain0.240

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)8.606
SRR2868004Drought Stress(Tissue:root)19.289
SRR2967015Control (Tissue:root)19.723

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave7.576
SRR9715740Leave2.218
SRR9715741Leave7.745
SRR9715739Root0.062
SRR9715742Root0.553
SRR9715743Root0.681

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h2.272
SRR8749028MeJA induced 9h27.504
SRR8749029MeJA induced 9h5.998
SRR8749030Uninduced64.880
SRR8749031Uninduced118.699
SRR8749032Uninduced56.863

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root8.395
SRR8400027Control-Root1.744

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved