Gene detail information of Glyur001005s00027811.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G56900.20CwfJ-like family protein / zinc finger (CCCH-type) family protein
NRXP_004507934.10PREDICTED: zinc finger CCCH domain-containing protein 64-like isoform X1 [Cicer arietinum]
Swissprottr|Q84WU9|C3H64_ARATH0Zinc finger CCCH domain-containing protein 64
trEMBLtr|K7LYU8|K7LYU8_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G16390.3}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold010051617120547-


Gene family

Gene familysubfamily
Transcription Factors FamilyC3H


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0003824  catalytic activity

GO:0046872  metal ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001005s00027811.1PF04677.10CwfJ_C_13804926.30E-37
Glyur001005s00027811.1PF04676.9CwfJ_C_25055956.00E-22


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control14.836
SRR1783600control14.829
SRR1783602moderate drought stress12.891
SRR1811619moderate drought stress12.765

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain13.438
DRR006520Root Summer glycyrrhizin high producing strain13.194
DRR006521Root Winter glycyrrhizin high producing strain16.336
DRR006522Root Winter glycyrrhizin high producing strain15.904
DRR006523Root Summer glycyrrhizin low producing strain13.767
DRR006524Root Summer glycyrrhizin low producing strain13.500
DRR006525Leaf Summer glycyrrhizin high producing strain10.521
DRR006526Leaf Summer glycyrrhizin high producing strain10.724

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)13.969
SRR2868004Drought Stress(Tissue:root)12.639
SRR2967015Control (Tissue:root)14.900

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave10.310
SRR9715740Leave8.822
SRR9715741Leave9.851
SRR9715739Root2.990
SRR9715742Root8.317
SRR9715743Root7.079

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h9.956
SRR8749028MeJA induced 9h12.160
SRR8749029MeJA induced 9h5.991
SRR8749030Uninduced2.454
SRR8749031Uninduced1.054
SRR8749032Uninduced1.430

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root18.608
SRR8400027Control-Root19.193

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved