Gene detail information of Glyur001005s00027815.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G56970.12.00E-164cytokinin oxidase 3
NRNP_001243813.10cytokinin dehydrogenase 3-like [Glycine max]
COGYP_001547531.12.00E-72FAD linked oxidase domain-containing protein [Herpetosiphon aurantiacus DSM 785]
Swissprottr|Q9LTS3|CKX3_ARATH0Cytokinin dehydrogenase 3 (Precursor)
trEMBLtr|H7BRI4|H7BRI4_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G06220.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold010054282346373-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00279CKX EC:1.5.99.12 Zeatin biosynthesis map00908


Gene Ontology

biological_process

GO:0009690  cytokinin metabolic process

GO:0055114  oxidation-reduction process


molecular_function

GO:0003824  catalytic activity

GO:0008762  UDP-N-acetylmuramate dehydrogenase activity

GO:0016491  oxidoreductase activity

GO:0016614  oxidoreductase activity, acting on CH-OH group of donors

GO:0019139  cytokinin dehydrogenase activity

GO:0050660  flavin adenine dinucleotide binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001005s00027815.1PF01565.18FAD_binding_4712182.10E-23
Glyur001005s00027815.1PF09265.5Cytokin-bind2505301.80E-108


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.061
SRR1783600control0.064
SRR1783602moderate drought stress0.023
SRR1811619moderate drought stress0.023

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.365
DRR006520Root Summer glycyrrhizin high producing strain0.330
DRR006521Root Winter glycyrrhizin high producing strain0.000
DRR006522Root Winter glycyrrhizin high producing strain0.000
DRR006523Root Summer glycyrrhizin low producing strain0.067
DRR006524Root Summer glycyrrhizin low producing strain0.067
DRR006525Leaf Summer glycyrrhizin high producing strain1.066
DRR006526Leaf Summer glycyrrhizin high producing strain1.023

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)0.664
SRR2868004Drought Stress(Tissue:root)0.344
SRR2967015Control (Tissue:root)1.143

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.123
SRR9715740Leave0.078
SRR9715741Leave0.020
SRR9715739Root0.000
SRR9715742Root0.218
SRR9715743Root0.509

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.174
SRR8749028MeJA induced 9h0.161
SRR8749029MeJA induced 9h0.432
SRR8749030Uninduced0.296
SRR8749031Uninduced0.611
SRR8749032Uninduced0.069

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root0.230
SRR8400027Control-Root0.866

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved