Gene detail information of Glyur001006s00028645.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G79550.20phosphoglycerate kinase
NRXP_003531483.10PREDICTED: phosphoglycerate kinase, cytosolic [Glycine max]
COGYP_007099668.103-phosphoglycerate kinase [Chamaesiphon minutus PCC 6605]
Swissprottr|Q42962|PGKY_TOBAC0Phosphoglycerate kinase, cytosolic
trEMBLtr|I1MJC7|I1MJC7_SOYBN0Phosphoglycerate kinase {ECO:0000256|RuleBase:RU000532}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0100641169435+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00927PGK, pgk EC:2.7.2.3 Carbon metabolism map01200
Biosynthesis of amino acidsmap01230
Glycolysis / Gluconeogenesismap00010
Carbon fixation in photosynthetic organismsmap00710


Gene Ontology

biological_process

GO:0006096  glycolytic process


molecular_function

GO:0004618  phosphoglycerate kinase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001006s00028645.1PF00162.14PGK93904.40E-166


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control388.498
SRR1783600control390.553
SRR1783602moderate drought stress270.293
SRR1811619moderate drought stress268.903

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain453.317
DRR006520Root Summer glycyrrhizin high producing strain448.947
DRR006521Root Winter glycyrrhizin high producing strain435.433
DRR006522Root Winter glycyrrhizin high producing strain425.294
DRR006523Root Summer glycyrrhizin low producing strain621.704
DRR006524Root Summer glycyrrhizin low producing strain621.937
DRR006525Leaf Summer glycyrrhizin high producing strain183.671
DRR006526Leaf Summer glycyrrhizin high producing strain182.580

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)586.022
SRR2868004Drought Stress(Tissue:root)394.146
SRR2967015Control (Tissue:root)329.390

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave343.448
SRR9715740Leave322.372
SRR9715741Leave368.474
SRR9715739Root477.219
SRR9715742Root457.524
SRR9715743Root461.459

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h541.025
SRR8749028MeJA induced 9h663.313
SRR8749029MeJA induced 9h731.717
SRR8749030Uninduced211.512
SRR8749031Uninduced209.064
SRR8749032Uninduced403.595

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root419.027
SRR8400027Control-Root385.755

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved