Gene detail information of Glyur001006s00028647.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G44800.14.00E-11chromatin remodeling 4
NRXP_004488759.15.60E-15PREDICTED: uncharacterized protein LOC101505600 [Cicer arietinum]
Swissprottr|F4KBP5|CHR4_ARATH2.00E-12Protein CHROMATIN REMODELING 4 {ECO:0000303|PubMed:16547115}
trEMBLtr|A0A067F606|A0A067F606_CITSI8.00E-14Uncharacterized protein {ECO:0000313|EMBL:KDO61565.1} (Fragment)

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold010062189226573+


Gene family

Gene familysubfamily
Transcription Factors FamilyPHD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001006s00028647.1PF00628.24PHD931331.50E-07


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control2.148
SRR1783600control2.029
SRR1783602moderate drought stress2.004
SRR1811619moderate drought stress2.196

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain2.219
DRR006520Root Summer glycyrrhizin high producing strain2.307
DRR006521Root Winter glycyrrhizin high producing strain1.356
DRR006522Root Winter glycyrrhizin high producing strain1.166
DRR006523Root Summer glycyrrhizin low producing strain3.889
DRR006524Root Summer glycyrrhizin low producing strain3.598
DRR006525Leaf Summer glycyrrhizin high producing strain1.651
DRR006526Leaf Summer glycyrrhizin high producing strain1.804

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)5.972
SRR2868004Drought Stress(Tissue:root)7.666
SRR2967015Control (Tissue:root)6.313

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave2.543
SRR9715740Leave2.056
SRR9715741Leave1.352
SRR9715739Root1.346
SRR9715742Root2.747
SRR9715743Root1.878

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h10.328
SRR8749028MeJA induced 9h4.045
SRR8749029MeJA induced 9h5.597
SRR8749030Uninduced1.393
SRR8749031Uninduced0.624
SRR8749032Uninduced0.767

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root7.376
SRR8400027Control-Root8.368

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved