Gene detail information of Glyur001006s00028650.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G79530.14.00E-164glyceraldehyde-3-phosphate dehydrogenase of plastid 1
NRXP_003596038.10Glyceraldehyde-3-phosphate dehydrogenase [Medicago truncatula]
COGYP_003074113.12.00E-149glyceraldehyde-3-phosphate dehydrogenase [Teredinibacter turnerae T7901]
Swissprottr|Q9SAJ6|G3PP1_ARATH0Glyceraldehyde-3-phosphate dehydrogenase GAPCP1, chloroplastic (Precursor)
trEMBLtr|G7IQT1|G7IQT1_MEDTR0Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361160}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold010065420960526+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00134GAPDH, gapA EC:1.2.1.12 Carbon metabolism map01200
Biosynthesis of amino acidsmap01230
Glycolysis / Gluconeogenesismap00010
Carbon fixation in photosynthetic organismsmap00710
HIF-1 signaling pathwaymap04066
Alzheimer's diseasemap05010


Gene Ontology

biological_process

GO:0055114  oxidation-reduction process


molecular_function

GO:0016620  oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001006s00028650.1PF00044.19Gp_dh_N922404.30E-60
Glyur001006s00028650.1PF02800.15Gp_dh_C2453525.70E-52


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control87.616
SRR1783600control88.242
SRR1783602moderate drought stress77.987
SRR1811619moderate drought stress78.167

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain162.689
DRR006520Root Summer glycyrrhizin high producing strain161.422
DRR006521Root Winter glycyrrhizin high producing strain50.396
DRR006522Root Winter glycyrrhizin high producing strain48.659
DRR006523Root Summer glycyrrhizin low producing strain135.011
DRR006524Root Summer glycyrrhizin low producing strain135.918
DRR006525Leaf Summer glycyrrhizin high producing strain19.480
DRR006526Leaf Summer glycyrrhizin high producing strain20.035

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)213.708
SRR2868004Drought Stress(Tissue:root)136.698
SRR2967015Control (Tissue:root)116.591

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave23.038
SRR9715740Leave7.644
SRR9715741Leave14.108
SRR9715739Root90.294
SRR9715742Root171.098
SRR9715743Root157.508

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h119.644
SRR8749028MeJA induced 9h128.010
SRR8749029MeJA induced 9h88.199
SRR8749030Uninduced106.688
SRR8749031Uninduced68.221
SRR8749032Uninduced64.985

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root284.224
SRR8400027Control-Root284.109

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved