Gene detail information of Glyur001007s00026105.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G72450.1 | 3.00E-22 | jasmonate-zim-domain protein 6 |
| NR | XP_004510528.1 | 6.90E-128 | PREDICTED: protein TIFY 11B-like [Cicer arietinum] |
| Swissprot | tr|Q9C9E3|TI11B_ARATH | 2.00E-25 | Protein TIFY 11B |
| trEMBL | tr|I3S7F0|I3S7F0_LOTJA | 2.00E-124 | Uncharacterized protein {ECO:0000313|EMBL:AFK36192.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01007 | 91570 | 94113 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | Tify |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001007s00026105.1 | PF06200.9 | tify | 100 | 132 | 1.50E-15 |
| Glyur001007s00026105.1 | PF09425.5 | CCT_2 | 186 | 208 | 3.50E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 21.776 |
| SRR1783600 | control | 21.622 |
| SRR1783602 | moderate drought stress | 18.821 |
| SRR1811619 | moderate drought stress | 18.759 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 96.938 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 95.899 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.099 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.951 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 40.871 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 40.428 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 36.311 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 36.005 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 50.694 |
| SRR2868004 | Drought Stress(Tissue:root) | 106.565 |
| SRR2967015 | Control (Tissue:root) | 53.790 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 825.157 |
| SRR9715740 | Leave | 626.617 |
| SRR9715741 | Leave | 993.786 |
| SRR9715739 | Root | 57.892 |
| SRR9715742 | Root | 285.511 |
| SRR9715743 | Root | 224.575 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 11.868 |
| SRR8749028 | MeJA induced 9h | 38.552 |
| SRR8749029 | MeJA induced 9h | 16.096 |
| SRR8749030 | Uninduced | 130.940 |
| SRR8749031 | Uninduced | 37.023 |
| SRR8749032 | Uninduced | 58.361 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 72.531 |
| SRR8400027 | Control-Root | 72.123 |