Gene detail information of Glyur001009s00021084.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G08190.10vacuolar protein sorting 41
NRXP_003538149.10PREDICTED: vacuolar protein sorting-associated protein 41 homolog [Glycine max]
Swissprottr|P93231|VPS41_SOLLC0Vacuolar protein sorting-associated protein 41 homolog
trEMBLtr|K7LQ96|K7LQ96_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G19660.4}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold010096648475028-


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0006886  intracellular protein transport

GO:0016192  vesicle-mediated transport


molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001009s00021084.1PF00400.27WD40811167.10E-05
Glyur001009s00021084.1PF00637.15Clathrin6087487.50E-20


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control19.417
SRR1783600control19.616
SRR1783602moderate drought stress17.949
SRR1811619moderate drought stress17.826

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain23.216
DRR006520Root Summer glycyrrhizin high producing strain23.039
DRR006521Root Winter glycyrrhizin high producing strain40.441
DRR006522Root Winter glycyrrhizin high producing strain39.216
DRR006523Root Summer glycyrrhizin low producing strain24.013
DRR006524Root Summer glycyrrhizin low producing strain23.687
DRR006525Leaf Summer glycyrrhizin high producing strain13.232
DRR006526Leaf Summer glycyrrhizin high producing strain13.270

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)27.542
SRR2868004Drought Stress(Tissue:root)28.406
SRR2967015Control (Tissue:root)30.220

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave15.426
SRR9715740Leave17.541
SRR9715741Leave17.843
SRR9715739Root7.515
SRR9715742Root20.366
SRR9715743Root20.029

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h14.863
SRR8749028MeJA induced 9h22.901
SRR8749029MeJA induced 9h10.991
SRR8749030Uninduced8.489
SRR8749031Uninduced4.879
SRR8749032Uninduced5.185

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root28.997
SRR8400027Control-Root29.121

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved