Gene detail information of Glyur001011s00030369.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G24760.1 | 4.00E-89 | Galactose oxidase/kelch repeat superfamily protein |
| NR | XP_003530882.1 | 0 | PREDICTED: F-box/kelch-repeat protein At3g24760-like [Glycine max] |
| COG | NP_869242.1 | 1.00E-07 | hypothetical protein RB10103 [Rhodopirellula baltica SH 1] |
| Swissprot | tr|Q3EB08|FBK69_ARATH | 1.00E-128 | F-box/kelch-repeat protein At3g24760 |
| trEMBL | tr|I1KZB7|I1KZB7_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G47090.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01011 | 62716 | 63900 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001011s00030369.1 | PF00646.28 | F-box | 5 | 45 | 5.50E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 27.902 |
| SRR1783600 | control | 28.367 |
| SRR1783602 | moderate drought stress | 36.216 |
| SRR1811619 | moderate drought stress | 37.003 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 16.316 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 16.991 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 14.181 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 14.749 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 17.104 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 16.913 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 12.168 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 12.994 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 22.706 |
| SRR2868004 | Drought Stress(Tissue:root) | 35.356 |
| SRR2967015 | Control (Tissue:root) | 29.977 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 8.315 |
| SRR9715740 | Leave | 12.543 |
| SRR9715741 | Leave | 12.326 |
| SRR9715739 | Root | 11.690 |
| SRR9715742 | Root | 16.178 |
| SRR9715743 | Root | 15.206 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.328 |
| SRR8749028 | MeJA induced 9h | 6.553 |
| SRR8749029 | MeJA induced 9h | 3.808 |
| SRR8749030 | Uninduced | 4.546 |
| SRR8749031 | Uninduced | 1.878 |
| SRR8749032 | Uninduced | 3.043 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 21.038 |
| SRR8400027 | Control-Root | 22.789 |