Gene detail information of Glyur001012s00035845.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G26945.1 | 9.00E-31 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
| NR | XP_003519021.1 | 9.91E-50 | PREDICTED: transcription factor bHLH135 [Glycine max] |
| Swissprot | tr|Q8GW32|PRE6_ARATH | 6.00E-39 | Transcription factor PRE6 |
| trEMBL | tr|I1J5N3|I1J5N3_SOYBN | 1.00E-49 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G05310.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01012 | 7417 | 8387 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | bHLH |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001012s00035845.1 | PF00010.21 | HLH | 21 | 60 | 2.30E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.124 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.967 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.873 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 9.522 |
| SRR2868004 | Drought Stress(Tissue:root) | 3.297 |
| SRR2967015 | Control (Tissue:root) | 7.966 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 2.764 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.935 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.659 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 15.300 |
| SRR8749028 | MeJA induced 9h | 1.323 |
| SRR8749029 | MeJA induced 9h | 8.860 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 1.235 |
| SRR8749032 | Uninduced | 2.296 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.168 |
| SRR8400027 | Control-Root | 0.658 |