Gene detail information of Glyur001013s00034084.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G16740.1 | 6.00E-82 | terpene synthase 03 |
| NR | XP_003526313.2 | 0 | PREDICTED: tricyclene synthase EBOS, chloroplastic-like [Glycine max] |
| Swissprot | tr|Q672F7|TPS2_LOTJA | 0 | Tricyclene synthase EBOS, chloroplastic (Precursor) |
| trEMBL | tr|K7KY89|K7KY89_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G45780.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01013 | 52043 | 58708 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K12742 | ispS | EC:4.2.3.27 | Terpenoid backbone biosynthesis | map00900 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001013s00034084.1 | PF01397.16 | Terpene_synth | 68 | 237 | 7.60E-45 |
| Glyur001013s00034084.1 | PF03936.11 | Terpene_synth_C | 269 | 490 | 4.20E-60 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.417 |
| SRR1811619 | moderate drought stress | 0.343 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.135 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.109 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.000 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.000 |
| SRR2967015 | Control (Tissue:root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 9.092 |
| SRR9715740 | Leave | 2.441 |
| SRR9715741 | Leave | 6.765 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.126 |
| SRR9715743 | Root | 0.044 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.343 |
| SRR8749031 | Uninduced | 1.084 |
| SRR8749032 | Uninduced | 0.106 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.283 |
| SRR8400027 | Control-Root | 0.016 |