Gene detail information of Glyur001016s00027695.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G71020.10ARM repeat superfamily protein
NRKEH30892.10armadillo/beta-catenin repeat protein [Medicago truncatula]
COGYP_001957949.11.00E-14hypothetical protein Aasi_0849 [Candidatus Amoebophilus asiaticus 5a2]
Swissprottr|Q9C9A6|PUB10_ARATH0U-box domain-containing protein 10
trEMBLtr|A0A072UML1|A0A072UML1_MEDTR0Armadillo/beta-catenin repeat protein {ECO:0000313|EMBL:KEH30892.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold010162687130198+


Gene family

Gene familysubfamily
Ubiquitin FamilyU_box


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0016567  protein ubiquitination


molecular_function

GO:0004842  ubiquitin-protein transferase activity

GO:0005488  binding

GO:0005515  protein binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001016s00027695.1PF04564.10U-box2743456.10E-21
Glyur001016s00027695.1PF00514.18Arm4044422.50E-09
Glyur001016s00027695.1PF00514.18Arm4865243.50E-09


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control27.049
SRR1783600control27.129
SRR1783602moderate drought stress15.137
SRR1811619moderate drought stress15.206

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain33.402
DRR006520Root Summer glycyrrhizin high producing strain32.875
DRR006521Root Winter glycyrrhizin high producing strain10.941
DRR006522Root Winter glycyrrhizin high producing strain10.716
DRR006523Root Summer glycyrrhizin low producing strain56.635
DRR006524Root Summer glycyrrhizin low producing strain56.850
DRR006525Leaf Summer glycyrrhizin high producing strain21.451
DRR006526Leaf Summer glycyrrhizin high producing strain21.508

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)41.780
SRR2868004Drought Stress(Tissue:root)42.838
SRR2967015Control (Tissue:root)38.974

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave33.507
SRR9715740Leave27.977
SRR9715741Leave33.978
SRR9715739Root12.157
SRR9715742Root26.070
SRR9715743Root25.649

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h43.466
SRR8749028MeJA induced 9h33.388
SRR8749029MeJA induced 9h35.543
SRR8749030Uninduced21.775
SRR8749031Uninduced3.973
SRR8749032Uninduced4.637

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root39.716
SRR8400027Control-Root49.799

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved