Gene detail information of Glyur001016s00027698.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G71010.10FORMS APLOID AND BINUCLEATE CELLS 1C
NRXP_004505260.10PREDICTED: putative 1-phosphatidylinositol-3-phosphate 5-kinase FAB1C-like isoform X1 [Cicer arietinum]
COGNP_147591.27.00E-18thermosome alpha subunit [Aeropyrum pernix K1]
Swissprottr|Q9SSJ8|FAB1C_ARATH0Putative 1-phosphatidylinositol-3-phosphate 5-kinase FAB1C
trEMBLtr|I1KM34|I1KM34_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G34030.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold010164084948788-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00921PIKFYVE, FAB1 EC:2.7.1.150 Inositol phosphate metabolism map00562
Phosphatidylinositol signaling systemmap04070
Phagosomemap04145
Regulation of actin cytoskeletonmap04810


Gene Ontology

biological_process

GO:0046488  phosphatidylinositol metabolic process


molecular_function

GO:0005524  ATP binding

GO:0016307  phosphatidylinositol phosphate kinase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001016s00027698.1PF00118.19Cpn60_TCP14156546.20E-28
Glyur001016s00027698.1PF01504.13PIP5K149717262.00E-66


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control20.891
SRR1783600control21.058
SRR1783602moderate drought stress19.034
SRR1811619moderate drought stress19.037

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain19.217
DRR006520Root Summer glycyrrhizin high producing strain19.033
DRR006521Root Winter glycyrrhizin high producing strain18.299
DRR006522Root Winter glycyrrhizin high producing strain17.673
DRR006523Root Summer glycyrrhizin low producing strain20.841
DRR006524Root Summer glycyrrhizin low producing strain20.594
DRR006525Leaf Summer glycyrrhizin high producing strain8.812
DRR006526Leaf Summer glycyrrhizin high producing strain8.750

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)28.399
SRR2868004Drought Stress(Tissue:root)43.282
SRR2967015Control (Tissue:root)38.756

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave13.592
SRR9715740Leave15.643
SRR9715741Leave15.704
SRR9715739Root2.204
SRR9715742Root18.008
SRR9715743Root14.350

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h13.545
SRR8749028MeJA induced 9h26.964
SRR8749029MeJA induced 9h19.191
SRR8749030Uninduced26.604
SRR8749031Uninduced70.162
SRR8749032Uninduced44.969

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root31.884
SRR8400027Control-Root30.423

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved