Gene detail information of Glyur001017s00031776.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G61415.1 | 4.00E-89 | SKP1-like 21 |
| NR | XP_006587291.1 | 0 | PREDICTED: SKP1-like protein 21-like isoform X2 [Glycine max] |
| Swissprot | tr|Q8LF97|ASK21_ARATH | 4.00E-116 | SKP1-like protein 21 |
| trEMBL | tr|I1L353|I1L353_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA09G25090.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01017 | 38822 | 46013 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | SKP1 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001017s00031776.1 | PF03931.10 | Skp1_POZ | 16 | 79 | 5.80E-05 |
| Glyur001017s00031776.1 | PF01466.14 | Skp1 | 89 | 158 | 2.40E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.203 |
| SRR1783600 | control | 8.300 |
| SRR1783602 | moderate drought stress | 12.027 |
| SRR1811619 | moderate drought stress | 11.820 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 15.033 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 14.600 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 18.204 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 17.477 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 15.420 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 15.264 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.054 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.204 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 17.470 |
| SRR2868004 | Drought Stress(Tissue:root) | 17.580 |
| SRR2967015 | Control (Tissue:root) | 17.417 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 13.727 |
| SRR9715740 | Leave | 16.461 |
| SRR9715741 | Leave | 17.871 |
| SRR9715739 | Root | 1.365 |
| SRR9715742 | Root | 8.563 |
| SRR9715743 | Root | 8.456 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 28.386 |
| SRR8749028 | MeJA induced 9h | 22.494 |
| SRR8749029 | MeJA induced 9h | 23.236 |
| SRR8749030 | Uninduced | 24.844 |
| SRR8749031 | Uninduced | 27.475 |
| SRR8749032 | Uninduced | 21.495 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 18.695 |
| SRR8400027 | Control-Root | 17.494 |