Gene detail

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Gene detail information of Glyur001019s00033954.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G08850.1	3.00E-83	Leucine-rich repeat receptor-like protein kinase family protein
NR	XP_003540583.1	0	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Glycine max]
COG	YP_001545726.1	2.00E-22	PASTA sensor-containing serine/threonine protein kinase [Herpetosiphon aurantiacus DSM 785]
Swissprot	tr\|Q8VZG8\|Y4885_ARATH	3.00E-97	Probable LRR receptor-like serine/threonine-protein kinase At4g08850 (Precursor)
trEMBL	tr\|K7LSB8\|K7LSB8_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G00980.2}

Sequence

Transcript Sequence

>Glyur001019s00033954.1
ATGAAAGCACCAATGATAGGGTGTCCAGCCCCATATTCGTATCAGATACCCATTATTGTTGCTTGTTTGGGAGGTGCCCTTTTTCTTTCATTGGTGTTAGTTGGGGTTGTTTTCTTCTACAATAAGAGAAAGTCAAGAGTGTCAAGACAAAAGTCTCCATTAAAAAGACCAAATCCATTTTCAATTTGGTACTTTAATGGAAGAGTTGTTTATGGAGATATAATTGAAGCTACCAATAACTTTGACATCCAGTATTGCATTGGGGAAGGAGCATTGGGAATAGTCTACAAAGCAATGGTGCCAGGAGGTCAAGTATTTGCTGTGAAGAAATTAAAATGTGATGAAGACGACTTAGACACTGTGAGCATAAAAACCTTTCAGAGTGAGGTAGAAGCCATGTCAGAAACACGCCACCGAAACATTGTGAAGCTTTACGGATTTTGCTGTGAAGGGATGCACACATTCATGATTTATGAGTATATGGACAGAGGGAGCTTAGCTGATATGCTGTCAAATGACACGAAAGCATTAGAATTAGATTGGCATAAGAGGGTTGATATTGTCAAAGGTGTGGCAAACGCTCTATCCTATATGCATCATGATTGTGCTACACCTTTAATTCATAGAGACATATCAAGCAAGAATGTTTTGTTATCATCCAATCTTGAAGCTCATGTCTCAGATTTTGGCACTGCAAGATTTCTGAAATCCGATTCACTTATTTGGACATCATTTCAAGGCACATATGGCTATGCTGCTCCAGAGCTTGCTTACACAATGGCAGTGACTGAGAAATGTGATGTGTTCAGATTTGGTGTTTTGGCATTTGAGGTTCTTACAGTAAAACACCCTGGTGATCTTGTTTCTTATATACAAACTTCTAATGAGCAAAAGATAGACTTCAAAGAGATTTTAGACAAGCGCCTCCCACCTCCTGCAAAAAAGGGTATCTTGAAGGAATTGCATTCGATTATGGACTTNGCTATTTCTTGTTTACAAACAGACCCTCAATCTCGACCAACCGTGCGAAGCATAGCTCAGCTGCTTGAAATGTAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold01019	76831	78703	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.12.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function GO:0004672 protein kinase activity GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001019s00033954.1	PF00069.20	Pkinase	83	347	2.20E-47

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.063
SRR1783600	control	0.067
SRR1783602	moderate drought stress	0.244
SRR1811619	moderate drought stress	0.283

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.487
DRR006520	Root Summer glycyrrhizin high producing strain	0.534
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.025
DRR006523	Root Summer glycyrrhizin low producing strain	1.045
DRR006524	Root Summer glycyrrhizin low producing strain	1.531
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.520
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.613

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.489
SRR2868004	Drought Stress(Tissue:root)	0.278
SRR2967015	Control (Tissue:root)	0.365

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.094
SRR9715740	Leave	0.070
SRR9715741	Leave	0.093
SRR9715739	Root	0.035
SRR9715742	Root	0.110
SRR9715743	Root	0.175

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.017
SRR8749028	MeJA induced 9h	0.177
SRR8749029	MeJA induced 9h	0.053
SRR8749030	Uninduced	0.127
SRR8749031	Uninduced	0.935
SRR8749032	Uninduced	1.683

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.182
SRR8400027	Control-Root	0.127