Gene detail information of Glyur001024s00028103.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G62020.1 | 1.00E-64 | heat shock transcription factor B2A |
| NR | XP_003555375.1 | 1.71E-165 | PREDICTED: heat stress transcription factor B-2a-like [Glycine max] |
| Swissprot | tr|Q9SCW4|HFB2A_ARATH | 3.00E-87 | Heat stress transcription factor B-2a |
| trEMBL | tr|I1NGR6|I1NGR6_SOYBN | 6.00E-166 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G29610.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01024 | 12835 | 14419 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | HSF |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001024s00028103.1 | PF00447.12 | HSF_DNA-bind | 24 | 114 | 4.90E-33 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.800 |
| SRR1783600 | control | 1.777 |
| SRR1783602 | moderate drought stress | 4.017 |
| SRR1811619 | moderate drought stress | 4.016 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 24.985 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 24.678 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 63.528 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 61.922 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 41.572 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 41.580 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.747 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.741 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 4.925 |
| SRR2868004 | Drought Stress(Tissue:root) | 9.911 |
| SRR2967015 | Control (Tissue:root) | 8.500 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 3.528 |
| SRR9715740 | Leave | 3.656 |
| SRR9715741 | Leave | 6.271 |
| SRR9715739 | Root | 6.317 |
| SRR9715742 | Root | 4.762 |
| SRR9715743 | Root | 4.639 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 24.506 |
| SRR8749028 | MeJA induced 9h | 37.977 |
| SRR8749029 | MeJA induced 9h | 52.125 |
| SRR8749030 | Uninduced | 9.400 |
| SRR8749031 | Uninduced | 43.397 |
| SRR8749032 | Uninduced | 77.283 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 2.502 |
| SRR8400027 | Control-Root | 3.934 |