Gene detail information of Glyur001024s00028111.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G05200.1 | 2.00E-28 | RING/U-box superfamily protein |
| NR | KEH43730.1 | 1.85E-51 | zinc finger, C3HC4 type (RING finger) protein [Medicago truncatula] |
| Swissprot | tr|Q8RXX9|ATL6_ARATH | 6.00E-35 | E3 ubiquitin-protein ligase ATL6 (Precursor) |
| trEMBL | tr|A0A072W088|A0A072W088_MEDTR | 7.00E-52 | Zinc finger, C3HC4 type (RING finger) protein {ECO:0000313|EMBL:KEH43730.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01024 | 44683 | 45507 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001024s00028111.1 | PF13639.1 | zf-RING_2 | 111 | 154 | 4.40E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.044 |
| SRR1783600 | control | 0.089 |
| SRR1783602 | moderate drought stress | 0.138 |
| SRR1811619 | moderate drought stress | 0.138 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.501 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.391 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.163 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.713 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.826 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.583 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.436 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.461 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.000 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.000 |
| SRR2967015 | Control (Tissue:root) | 0.062 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 5.708 |
| SRR9715740 | Leave | 4.846 |
| SRR9715741 | Leave | 3.356 |
| SRR9715739 | Root | 0.067 |
| SRR9715742 | Root | 0.397 |
| SRR9715743 | Root | 0.855 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.460 |
| SRR8749028 | MeJA induced 9h | 0.564 |
| SRR8749029 | MeJA induced 9h | 0.235 |
| SRR8749030 | Uninduced | 0.200 |
| SRR8749031 | Uninduced | 0.186 |
| SRR8749032 | Uninduced | 0.383 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.000 |
| SRR8400027 | Control-Root | 0.125 |