Gene detail information of Glyur001024s00028115.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G48880.2 | 4.00E-119 | RNI-like superfamily protein |
| NR | XP_006606101.1 | 0 | PREDICTED: F-box/LRR-repeat protein At3g48880-like isoform X1 [Glycine max] |
| Swissprot | tr|Q9M2Z5|FBL53_ARATH | 3.00E-146 | F-box/LRR-repeat protein At3g48880 |
| trEMBL | tr|I1NGS2|I1NGS2_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G29670.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01024 | 66409 | 73951 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001024s00028115.1 | PF12937.2 | F-box-like | 17 | 57 | 5.20E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 12.402 |
| SRR1783600 | control | 12.247 |
| SRR1783602 | moderate drought stress | 11.766 |
| SRR1811619 | moderate drought stress | 11.466 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.827 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 12.474 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.040 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.295 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 13.507 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 12.884 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.704 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.230 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 11.313 |
| SRR2868004 | Drought Stress(Tissue:root) | 12.256 |
| SRR2967015 | Control (Tissue:root) | 13.572 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 6.893 |
| SRR9715740 | Leave | 8.602 |
| SRR9715741 | Leave | 9.384 |
| SRR9715739 | Root | 7.770 |
| SRR9715742 | Root | 7.627 |
| SRR9715743 | Root | 5.927 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.510 |
| SRR8749028 | MeJA induced 9h | 8.121 |
| SRR8749029 | MeJA induced 9h | 6.083 |
| SRR8749030 | Uninduced | 9.063 |
| SRR8749031 | Uninduced | 6.712 |
| SRR8749032 | Uninduced | 4.834 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 13.141 |
| SRR8400027 | Control-Root | 12.912 |