Gene detail information of Glyur001025s00025597.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G58580.1 | 1.00E-18 | TOXICOS EN LEVADURA 63 |
| NR | XP_007142184.1 | 4.71E-76 | hypothetical protein PHAVU_008G259300g [Phaseolus vulgaris] |
| Swissprot | tr|Q8L9T5|ATL2_ARATH | 4.00E-27 | RING-H2 finger protein ATL2 |
| trEMBL | tr|V7BBF8|V7BBF8_PHAVU | 2.00E-76 | Uncharacterized protein {ECO:0000313|EMBL:ESW14178.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01025 | 41802 | 42593 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001025s00025597.1 | PF13639.1 | zf-RING_2 | 133 | 176 | 2.60E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.207 |
| SRR1783600 | control | 1.343 |
| SRR1783602 | moderate drought stress | 0.797 |
| SRR1811619 | moderate drought stress | 0.793 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.402 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.381 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.141 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.137 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.263 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.419 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.868 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.978 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.535 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.845 |
| SRR2967015 | Control (Tissue:root) | 0.413 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 36.797 |
| SRR9715740 | Leave | 17.714 |
| SRR9715741 | Leave | 35.560 |
| SRR9715739 | Root | 23.929 |
| SRR9715742 | Root | 29.302 |
| SRR9715743 | Root | 25.482 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.077 |
| SRR8749028 | MeJA induced 9h | 0.650 |
| SRR8749029 | MeJA induced 9h | 0.527 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 2.677 |
| SRR8400027 | Control-Root | 9.105 |