Gene detail information of Glyur001030s00028195.2 |
Functional Annotation
Database | Orthologs | E value | Annotation |
---|---|---|---|
TAIR | AT3G56370.1 | 0 | Leucine-rich repeat protein kinase family protein |
NR | NP_001239730.1 | 0 | probably inactive leucine-rich repeat receptor-like protein kinase At3g28040-like precursor [Glycine max] |
COG | YP_004775215.1 | 9.00E-54 | RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745] |
Swissprot | tr|Q9LRT1|Y3804_ARATH | 0 | Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 (Precursor) |
trEMBL | tr|I1KB74|I1KB74_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G14770.1} |
Sequence
Transcript Sequence |
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Protein Sequence |
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Location information(JBrowse)
Scaffold | Start | End | Strand |
---|---|---|---|
Scaffold01030 | 20891 | 25625 | + |
Gene family
Gene family | subfamily |
---|---|
Protein Kinases Family | PPC:1.12.3 |
KEGG pathway
KO | Enzyme | Enzyme ID | pathway | mapID |
---|---|---|---|---|
-- | -- | -- | -- | -- |
Gene Ontology
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Pfam domain
Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
---|---|---|---|---|---|
Glyur001030s00028195.2 | PF08263.7 | LRRNT_2 | 31 | 73 | 3.20E-09 |
Glyur001030s00028195.2 | PF13855.1 | LRR_8 | 103 | 161 | 6.50E-08 |
Glyur001030s00028195.2 | PF00560.28 | LRR_1 | 200 | 218 | 0.9 |
Glyur001030s00028195.2 | PF00560.28 | LRR_1 | 223 | 245 | 1.1 |
Glyur001030s00028195.2 | PF13855.1 | LRR_8 | 295 | 353 | 2.00E-08 |
Glyur001030s00028195.2 | PF12799.2 | LRR_4 | 396 | 431 | 7.40E-07 |
Glyur001030s00028195.2 | PF13855.1 | LRR_8 | 468 | 527 | 1.30E-08 |
Glyur001030s00028195.2 | PF00560.28 | LRR_1 | 540 | 560 | 1.1 |
Glyur001030s00028195.2 | PF07714.12 | Pkinase_Tyr | 697 | 964 | 2.90E-42 |
Expression pattern
SRA Experiment | Description | TPM |
---|---|---|
SRR1783599 | control | 10.243 |
SRR1783600 | control | 10.125 |
SRR1783602 | moderate drought stress | 6.970 |
SRR1811619 | moderate drought stress | 6.633 |
SRA Experiment | Description | TPM |
---|---|---|
DRR006519 | Root Summer glycyrrhizin high producing strain | 10.825 |
DRR006520 | Root Summer glycyrrhizin high producing strain | 10.529 |
DRR006521 | Root Winter glycyrrhizin high producing strain | 0.368 |
DRR006522 | Root Winter glycyrrhizin high producing strain | 0.303 |
DRR006523 | Root Summer glycyrrhizin low producing strain | 6.229 |
DRR006524 | Root Summer glycyrrhizin low producing strain | 5.686 |
DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.430 |
DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.120 |
SRA Experiment | Description | TPM |
---|---|---|
SRR2867873 | Salt Stress(Tissue:root) | 45.216 |
SRR2868004 | Drought Stress(Tissue:root) | 32.429 |
SRR2967015 | Control (Tissue:root) | 31.763 |
SRA Experiment | Description | TPM |
---|---|---|
SRR9715738 | Leave | 6.789 |
SRR9715740 | Leave | 2.025 |
SRR9715741 | Leave | 2.562 |
SRR9715739 | Root | 10.268 |
SRR9715742 | Root | 11.686 |
SRR9715743 | Root | 10.937 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8749027 | MeJA induced 9h | 3.744 |
SRR8749028 | MeJA induced 9h | 1.922 |
SRR8749029 | MeJA induced 9h | 1.489 |
SRR8749030 | Uninduced | 0.154 |
SRR8749031 | Uninduced | 0.039 |
SRR8749032 | Uninduced | 0.195 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8400026 | NaCl treatment-Root | 23.735 |
SRR8400027 | Control-Root | 29.472 |