Gene detail information of Glyur001030s00028206.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G10910.1 | 2.00E-37 | RING/U-box superfamily protein |
| NR | XP_003528016.1 | 1.29E-92 | PREDICTED: RING-H2 finger protein ATL72-like [Glycine max] |
| Swissprot | tr|Q9SG96|ATL72_ARATH | 2.00E-56 | RING-H2 finger protein ATL72 |
| trEMBL | tr|K7KV15|K7KV15_SOYBN | 5.00E-93 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G14830.3} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01030 | 61426 | 62028 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001030s00028206.1 | PF13639.1 | zf-RING_2 | 118 | 161 | 5.90E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.275 |
| SRR1783600 | control | 0.125 |
| SRR1783602 | moderate drought stress | 0.149 |
| SRR1811619 | moderate drought stress | 0.206 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.180 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.297 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.551 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.407 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.047 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.047 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.058 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.082 |
| SRR2967015 | Control (Tissue:root) | 0.195 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.753 |
| SRR9715740 | Leave | 0.053 |
| SRR9715741 | Leave | 0.159 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.183 |
| SRR9715743 | Root | 0.199 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.101 |
| SRR8749030 | Uninduced | 0.006 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.220 |
| SRR8400027 | Control-Root | 0.126 |