Gene detail

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Gene detail information of Glyur001032s00027431.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G55570.1	0	SKU5 similar 12
NR	XP_003607814.1	0	L-ascorbate oxidase-like protein [Medicago truncatula]
COG	YP_008155740.1	2.00E-15	hypothetical protein SCE1572_46965 [Sorangium cellulosum So0157-2]
Swissprot	tr\|Q00624\|ASOL_BRANA	0	L-ascorbate oxidase homolog (Precursor)
trEMBL	tr\|G7JHJ4\|G7JHJ4_MEDTR	0	L-ascorbate oxidase-like protein {ECO:0000313\|EMBL:AES90011.1}

Sequence

Transcript Sequence

>Glyur001032s00027431.1
ATGGGTCGTGGTACTGGTGGGGCGTTGTTAGCTTTGACGCTCTGCCTCATGGCAGTAGCGGTGAAGGGTGAGGATCCCTACGTGTACTACACATGGAACGTCACGTACGGAACAATTTCCCCCTTGGGGAAACCCGAACAGGGCATTCTCATCAACGGCCAATTCCCTGGACCCGAAATCAACTGCACCAGCAACAACAACATCGTCGTGAACGTGTTCAACAACCTCAACGAGGAAGTCCTCTTCACCTGGAGCGGTATCCAACAGAGGAAGAACTCGTGGCAAGACGGCACACTGGGAACCCAGTGTACCATCGCCCCAGGCACCAACTACACCTACAAGTTCCAAGTTAAGGACCAGATCGGTAGCTACTTCTATTACCCAACCACGCAACTCCATAGAGCAGCCGGTGGATTCGGTGGAATCAGAATCTTTAGCCGTCTTTTGATCCCCGTCCCTTACGCCGATCCCGCTGATGAGTACTGGGTCCTCATGGGTGACTGGTACGCCAACGACCACAGGACCCTCATGAACTTCTTGGATAGTGGTCGATCCATTGGTAGGCCCGCTGGGGTCCACATCATGGGCAAAAACGGTAGCAAACAACCACTCTACACCATGGAGCCCGGTAAGACGTACAAGTACAGGCTCTGCAACGTGGGTCTCAAGGACTCCCTCAACTTCAGGATCCAAAACCACCCCATGAAGCTCGTCGAGATGGAAGGGTCCCACACCGTCCAGAACTCCTACGAATCCCTTGATGTCCACGTCGGACAATGCTTCTCTGTCCTCGTAACCGCCGACAAGGACCCCAAGGATTACCTCATGGTGGCCTCCACACGCTTCATGAAAACCGTTCTAACCGCAACCGCCACAATCCGTTACTCCAACAGTAAGGGCCCCGCATCCCCCGTGATCCCACCTGCACCCGTGGGCTGGGCCTGGTCTTTGAATCAGTTCAGGTCCTTCCATTGGAACCTAACCGCCAGCGCTGCTAGGCCCAANCCACAGGGCTCTTACCACTACGGGCAGATCAACATCACCCGCACCATCAAGCTCGTCAACACCGTCGGCAAGGACCCCAAGGGCAAGCTCCGCTACGCACTCAACGGCATCTCCCACGTGGAAAATTTGACCCCACTGAAGCTCGCCGAGTACTACGGAATCGCCGAGAAGGTTTTCCAATACAACACCATGCCCGACAACCCGCCCGCGGTGATCGGTGACGTCGTCACCCTGGCGCCGAACGTGATCAACGCCACGTTCCGCACCTTCATCGAGATCATCTTCGAGAACCCGGGGAAGACGATCCAGTCGTACAACCTGGACGGTTACTCGTTCTTCTTGGTGGCCATTGAGCCCGGGAAGTGGACGCCGGAGAAGAGGAAGAACTACAACCTTCTGGATGGGGTGAGCAGGCACACGGTGCAGGTGTTCCCGAAGTCATGGGCGGCGATAATGTTGACATTCGACAACGCGGGGATGTGGAACTTGAGGTCGGAGCAGGCGGAGAACAGGTACCTAGGACAACAACTGTACATCAGTGTTCAGTCACCTGAGAAGTCACAGAGGGACGAGTACAACCTTCCTGATACTCAGCTCCTTTGCGGCATCAGAGCTACATCCAGAGAGAGAGAGAGAGAGAGATCCAGATATCATCAGGAGTACGAAATGAAGGGTGTAATGTTTTTTGCGTTGCTATGCCTATTGGCCGCAGGTACAACGGTGCGGGGTGAAGACCCTTACTTCTATTTCACATGGAATGTCACATATGGCACGCTCTCCCCAGCTGGTGTTCCCCAACAGGTCATCCTCATCAACAATGAGTTCCCGGGACCCAACATCAACTCCACCAGTAACAACAACCTTGTCATCAATGTCTTCAACAACCTCGACGAGCCTCTCCTTTTCACATGGGCGGGGATCCAACAAAGGAAGAACTCGTGGCAAGATGGTGTTCTAGGAACAAACTGCCCCATCCTACCAGGAACAAACTGGACATACAAGTTCCAGATCGGTAGCTACTTCTACTACCCCAGCATTGGGATGCACAGGGCAGCTGGTGGGTTCGGTGGCCTCCGCGTGAACAGCCGGTTGCTGATCCCCGTCCCCTATGCTGATCCCGAGGATGACTACACCGTCCTCGCCGGTGACTGGTACACCAAGAGCCACTCCGCCCTCAGCAAGTTGCTCGACAGCGGCCGCTCCCTCGGCAGGCCTCAGGCCGTTCTCATCAANGGCCAGAACGCCAAGGGAGACGGAAGCGACAAGCCACTCTTCACCATGAAGCCAGGGAAGACCTACAAGTACAGGATCTGCAACGTGGGACTCAAGAACTCCCTCAACTTCAGGATTCAAAACCACCCCCTAAAGCTTGTCGAGATGGAAGGGTCCCACACCGTCCAGAACTCNTACGACTCCCTCGATGTCCANGTNGGACAGTGCTTCGGTGTCCTTGTAACTGCCGACAAGGAACCCAAGGATTACTATATGGTGGCCTCCACGCGCTTCACCAAAACCGTTCTTACTGGTAAAGGGATTATTCGTTACACCAACGGTAAGGGCCCGGCTTCCCCTGAGATCCTCGAGGCTCCAGTGGGCTGGGCTTGGTCTTTGAACCAGTTCAGGTCCTTCCGTTGGAACCTAACCGCCAGTGCTGCCAGGCCTAACCCACAAGGCTCTTACCACTATGGACAGATCAACATCACCCGCACCGTTAAGCTCATTAACTCCGTCAGCAGGGACGGCGGNAAGCTTCGTTACGGGCTCAACGGCGTCTCTCACGTGGAACCAGAGACCCCAATCAAGCTCGCCGAGTATTACGGAATCGCGGAGAAGGTTTTCAAGTACGACAGCATTGAGGATAACCCTCAAGGTGTTCCAAGTACACTCACCGTGCAACCCAATGTCCTTAACTTCACCTATCGCACCTTCATCGAGATCATCTTTGAGAACCACGAGAAAAGCATCCAGTCTTATAATTTGGCTGGATACTCATTCTTTGCAGTCGCCATAGAGCCAGGGACATGGGCCCCGGAGAAGAGGAAGAGCTACAACCTTCTGGATGCGGTGAGCAGACACACGGTTCAAGTGTTCCCAAAATCATGGGCAGCGATAATGTTGACATTCGACAACGTAGGGGTGTGGAACTTGAGGTCAGAGATTGCTGAGAATCGCTACCTGGGACAACAGATGTATATCAGTGTGATGACACCGGAGCGTTCTCTGAGGGATGAGTACAATCTGCCAGAGACTAGCTTGCTTTGTGGCGCCGTCAAGGGTCTGCCAAAGCCAGCGCCATACACTTAA

Protein Sequence

>Glyur001032s00027431.1
MGRGTGGALLALTLCLMAVAVKGEDPYVYYTWNVTYGTISPLGKPEQGILINGQFPGPEINCTSNNNIVVNVFNNLNEEVLFTWSGIQQRKNSWQDGTLGTQCTIAPGTNYTYKFQVKDQIGSYFYYPTTQLHRAAGGFGGIRIFSRLLIPVPYADPADEYWVLMGDWYANDHRTLMNFLDSGRSIGRPAGVHIMGKNGSKQPLYTMEPGKTYKYRLCNVGLKDSLNFRIQNHPMKLVEMEGSHTVQNSYESLDVHVGQCFSVLVTADKDPKDYLMVASTRFMKTVLTATATIRYSNSKGPASPVIPPAPVGWAWSLNQFRSFHWNLTASAARPXPQGSYHYGQINITRTIKLVNTVGKDPKGKLRYALNGISHVENLTPLKLAEYYGIAEKVFQYNTMPDNPPAVIGDVVTLAPNVINATFRTFIEIIFENPGKTIQSYNLDGYSFFLVAIEPGKWTPEKRKNYNLLDGVSRHTVQVFPKSWAAIMLTFDNAGMWNLRSEQAENRYLGQQLYISVQSPEKSQRDEYNLPDTQLLCGIRATSRERERERSRYHQEYEMKGVMFFALLCLLAAGTTVRGEDPYFYFTWNVTYGTLSPAGVPQQVILINNEFPGPNINSTSNNNLVINVFNNLDEPLLFTWAGIQQRKNSWQDGVLGTNCPILPGTNWTYKFQIGSYFYYPSIGMHRAAGGFGGLRVNSRLLIPVPYADPEDDYTVLAGDWYTKSHSALSKLLDSGRSLGRPQAVLIXGQNAKGDGSDKPLFTMKPGKTYKYRICNVGLKNSLNFRIQNHPLKLVEMEGSHTVQNSYDSLDVXVGQCFGVLVTADKEPKDYYMVASTRFTKTVLTGKGIIRYTNGKGPASPEILEAPVGWAWSLNQFRSFRWNLTASAARPNPQGSYHYGQINITRTVKLINSVSRDGGKLRYGLNGVSHVEPETPIKLAEYYGIAEKVFKYDSIEDNPQGVPSTLTVQPNVLNFTYRTFIEIIFENHEKSIQSYNLAGYSFFAVAIEPGTWAPEKRKSYNLLDAVSRHTVQVFPKSWAAIMLTFDNVGVWNLRSEIAENRYLGQQMYISVMTPERSLRDEYNLPETSLLCGAVKGLPKPAPYT

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold01032	62205	71960	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00423	E1.10.3.3	EC:1.10.3.3	Ascorbate and aldarate metabolism	map00053

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function GO:0005507 copper ion binding GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001032s00027431.1	PF07732.10	Cu-oxidase_3	33	145	8.80E-37
Glyur001032s00027431.1	PF00394.17	Cu-oxidase	160	297	3.50E-35
Glyur001032s00027431.1	PF07731.9	Cu-oxidase_2	401	519	1.80E-20
Glyur001032s00027431.1	PF07732.10	Cu-oxidase_3	589	698	1.60E-31
Glyur001032s00027431.1	PF00394.17	Cu-oxidase	711	851	1.20E-36
Glyur001032s00027431.1	PF07731.9	Cu-oxidase_2	963	1073	2.70E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.178
SRR1783600	control	0.175
SRR1783602	moderate drought stress	0.012
SRR1811619	moderate drought stress	0.011

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.297
DRR006520	Root Summer glycyrrhizin high producing strain	0.292
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.033
DRR006524	Root Summer glycyrrhizin low producing strain	0.033
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.056
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.056

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.021
SRR2868004	Drought Stress(Tissue:root)	0.014
SRR2967015	Control (Tissue:root)	0.031

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.021
SRR9715740	Leave	0.018
SRR9715741	Leave	0.020
SRR9715739	Root	0.439
SRR9715742	Root	0.183
SRR9715743	Root	0.100

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.022
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.053

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.101
SRR8400027	Control-Root	0.263