Gene detail information of Glyur001033s00031543.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G04220.103-ketoacyl-CoA synthase 2
NRXP_003519009.10PREDICTED: 3-ketoacyl-CoA synthase 11-like [Glycine max]
COGNP_285649.13.00E-14chalcone synthase [Deinococcus radiodurans R1]
Swissprottr|Q5XEP9|KCS17_ARATH03-ketoacyl-CoA synthase 17
trEMBLtr|I1JB48|I1JB48_SOYBN03-ketoacyl-CoA synthase {ECO:0000256|PIRNR:PIRNR036417}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold010337356576732+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K15397KCS EC:2.3.1.199 Fatty acid elongation map00062


Gene Ontology

biological_process

GO:0006633  fatty acid biosynthetic process

GO:0008152  metabolic process

GO:0008610  lipid biosynthetic process


cellular_component

GO:0016020  membrane


molecular_function

GO:0003824  catalytic activity

GO:0016747  transferase activity, transferring acyl groups other than amino-acyl groups

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001033s00031543.1PF08392.7FAE1_CUT1_RppA1012679.80E-75
Glyur001033s00031543.1PF08392.7FAE1_CUT1_RppA2824119.90E-64
Glyur001033s00031543.1PF08541.5ACP_syn_III_C4295082.90E-09


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control8.599
SRR1783600control8.688
SRR1783602moderate drought stress7.522
SRR1811619moderate drought stress7.412

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.000
DRR006520Root Summer glycyrrhizin high producing strain0.000
DRR006521Root Winter glycyrrhizin high producing strain0.062
DRR006522Root Winter glycyrrhizin high producing strain0.061
DRR006523Root Summer glycyrrhizin low producing strain0.000
DRR006524Root Summer glycyrrhizin low producing strain0.000
DRR006525Leaf Summer glycyrrhizin high producing strain6.447
DRR006526Leaf Summer glycyrrhizin high producing strain6.352

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)44.376
SRR2868004Drought Stress(Tissue:root)28.446
SRR2967015Control (Tissue:root)26.685

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave24.872
SRR9715740Leave5.682
SRR9715741Leave8.249
SRR9715739Root9.448
SRR9715742Root11.083
SRR9715743Root12.952

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.040
SRR8749028MeJA induced 9h0.011
SRR8749029MeJA induced 9h0.061
SRR8749030Uninduced3.100
SRR8749031Uninduced9.059
SRR8749032Uninduced1.046

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root72.836
SRR8400027Control-Root63.642

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved