Gene detail information of Glyur001034s00029015.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G09620.10ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases
NRXP_004506691.10PREDICTED: leucine--tRNA ligase, cytoplasmic-like isoform X1 [Cicer arietinum]
COGYP_685547.11.00E-177leucyl-tRNA synthetase [Methanocella arvoryzae MRE50]
trEMBLtr|I1J9U5|I1J9U5_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G41660.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold010345725861805-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01869LARS, leuS EC:6.1.1.4 Aminoacyl-tRNA biosynthesis map00970


Gene Ontology

biological_process

GO:0006418  tRNA aminoacylation for protein translation

GO:0006429  leucyl-tRNA aminoacylation


cellular_component

GO:0005737  cytoplasm


molecular_function

GO:0000166  nucleotide binding

GO:0002161  aminoacyl-tRNA editing activity

GO:0004812  aminoacyl-tRNA ligase activity

GO:0004823  leucine-tRNA ligase activity

GO:0005524  ATP binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001034s00029015.1PF00133.17tRNA-synt_1561382.10E-07
Glyur001034s00029015.1PF00133.17tRNA-synt_12317934.70E-31
Glyur001034s00029015.1PF08264.8Anticodon_18329591.50E-13


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control39.318
SRR1783600control39.499
SRR1783602moderate drought stress62.255
SRR1811619moderate drought stress61.686

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain36.653
DRR006520Root Summer glycyrrhizin high producing strain36.192
DRR006521Root Winter glycyrrhizin high producing strain38.775
DRR006522Root Winter glycyrrhizin high producing strain37.724
DRR006523Root Summer glycyrrhizin low producing strain50.027
DRR006524Root Summer glycyrrhizin low producing strain49.752
DRR006525Leaf Summer glycyrrhizin high producing strain15.692
DRR006526Leaf Summer glycyrrhizin high producing strain15.927

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)65.617
SRR2868004Drought Stress(Tissue:root)64.629
SRR2967015Control (Tissue:root)68.451

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave28.596
SRR9715740Leave28.440
SRR9715741Leave32.614
SRR9715739Root33.240
SRR9715742Root59.938
SRR9715743Root56.732

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h31.444
SRR8749028MeJA induced 9h52.985
SRR8749029MeJA induced 9h17.790
SRR8749030Uninduced11.663
SRR8749031Uninduced8.399
SRR8749032Uninduced10.177

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root55.794
SRR8400027Control-Root53.780

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved