Gene detail

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Gene detail information of Glyur001036s00023765.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G78540.1	SH2 domain protein B
NR	XP_004513787.1	PREDICTED: uncharacterized protein LOC101502730 [Cicer arietinum]
trEMBL	tr\|V7AII7\|V7AII7_PHAVU	Uncharacterized protein {ECO:0000313\|EMBL:ESW05364.1}

Sequence

Transcript Sequence

>Glyur001036s00023765.1
CACACTTGGAGTTTCATGTTCCCTCACAAACCGGGACGCTCAACCGAACCATTAGTTTAACAGCCGTCACATGTGAAAAAAAACCACCGTCAACACAAATTCGCAGTTGTCTAAGACCCGAGAAAACGCGAAGAACTCCACTCTACTATTGTCATTGATTTGTTGAGCTTGTTCACTTCACTTCGTAGAGAGAGAGAGTGTGTGTGTCACGTCACGGGCACTGAATACTGATGCAATAATGGGAAGCGAAGGGTACTCTACGCTGAAGGATTTAAGAGTGGAAATTGATGGAAAGGAGGGAACATTCTCTCTCTGCTTTTGGGTTTATTTGATGCGCTCCACTACATTCCCTGCTACCATTATCCAGCAGGTTTACTCCGATATCTCTGAAAGTGCTCCTCTTCTCATTATCAATGATAGTAGGAGAATCAATATTTTACCAGTTCTTTTCTTACATGAAGAAGCTCCTGATACTGGCAGTATAAATTCCTGGACAGAAGTTCCACATGCTACTGTTGATTTTGAGTTTCCTTTGGAAAAATGGGTTCATGTTGGATGTGAGGTTTGTCCAAATCATATTCGGCTTCAGATTAATGGAGAGATTGTAGGGGAGAAGTCTTTGTCTTCCTCATCAAGTACGGAATCCAATTCAAGTAATTTGAAGAAAATAACTTTGGCCAATGTTGGTGGAGACGGNAAGAGTGTGCATGGTTATTTGCACAATTTTGAAATATTTCCTATTGTTTCTTCTATTAAGGATCATCATTTAAAGGACCCTCCTCTGAAGTTATCAATTGATGAATCATCTGCCTCTGAGATTGAAGAAGAAAGTGATGGTATTTGGAGCATCGTTGGTGGCAAAGCNTCTTGTCGCAGGAACTTTTCTTTAGATGTTGTTTTATCAGATGCCTTTGGACAGCCTGTAGATAAGGAGAATGAGGTTTTTGCTTCACTTTTGTATGCTGACACGGGGGCTCCAGTGGAGAATACAACTGATGAAGAAGCACCCCTTTTGACTAGCTATGATGGAATTGAATTTTCTTCTTNTGAAAGACCAAGTAAACTTTTGCTGGGGCGTGCATCATTTAAGCTCAAGATATCTCAGCTTTCATCCAAGTGTGATAACAGGTTGTTCCTCATCAGATTTTGCATTCCAAAATTTGGAAATTATCCCTTCCTTGAGACATACACCCGTCCGATTCGATGCATCTCCAGGAGCCGTAACACAAGATTATCCACTCTGGTGTGGAAAAAGCCAACTTACGCTCTTCATCAACTCAGTTTATCACAATCTTCAGCAATGGATGATGGGTCATTGGAACATCTGCATTCTGGTAATGAAGCAAAAGCCAATCCTCTGATGAAACGGTTTAGAGTTGGACATGACAAGATATCTGTATCATTAAAGGGTGACCCCACCTTAGAGCAATCTGGTGAGGAATGCAATTCTCATGTCTGGACTGCTAATCAGGTTGATAGGTTTCCAACAAGCTTGGATGGCAGACCTGTTAACTTTGATGAAGCAGATGACTCTCCATCTGATTCAGAGAGTATAGGAGAGAGAAATTCACCTTCAAATAGTATGGCAAGTAGAAGATATCCAATATCTGATATGACCATTTTCAAATACTGCCTGTCAGGCTTGGCTGAGAGATCACTCATGCTTAAGGAAATTGCTGTCTCTGCTTCTGACAAAGAAATTTCAGAGTTGGCTCATCATGTTTCACACTATTCAGGATGTTCACACCATGGAAACCAAATATTAATTACCAAGAAATTGATAGAAGATGGAACTAGTCTTTGGAAGGTTATGTCTCCAAGCAACCACCACATTCCTTGGGAGAGTGCAATGTATGAGATTGAAGACAAATTCATGAAGACTGCTTCTTGTGGTTCAAGATCTCTATCACATCAGGACCTTGAGCTTCTGAGAAGGATTTCTGGATGTCAAGAGTATCTAACACAAGAGAACTTCGAGAAGTTGTGGTGCTGGTTGTACCCTGTAGCTTATATGATATCAAGGGACTGGATAAATCCTATCTGGAATTCCACATCACCTAGGTGGATTGAAGGTTTCATCACTAAGGAGGAGGCAGAAGCTTCACTTCAAGGTCCTATAGGGTTTCAAGAACCTGGTACCTTTATACTCCGGTTCCCCACCTCAAGAAGCTGGCCCCACCCAGATGCAGGTAGCCTAATTGTGACTTATGTTGGCAATGACTACAAACTTCACCACAGACTACTTTCAATGGATCATATATATGGCTCGGATGATAAAAGAATTGACGTGAAACCATTGCAAGATATGCTACTGGCAGAACCTGAACTGTCTCGGTTGGGAAGGATAATAAGAAGTCATTAAGCACACTTGGCATTTTGGCAGAATATCCCTCAATATCCAGCTAAAGTTGCTTTCATGATAGACTCAAAAGGGAGGATGGGGTTGAATTGTGATAGTGTATTTTCATTTAGCATGTACATATGTAAAGTAAGATTTTAGGGGTTATTATTTTAACACTAGCAGCTGGTGATCATTGTGTAACAACTCCATTTACATTCATA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold01036	11855	18487	-

Gene family

Gene family	subfamily
Transcription Factors Family	STAT

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006355 regulation of transcription, DNA-templated

GO:0007165 signal transduction

cellular_component GO:0005634 nucleus molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding GO:0004871 signal transducer activity "

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001036s00023765.1	PF13385.1	Laminin_G_3	18	166	2.90E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.232
SRR1783600	control	5.226
SRR1783602	moderate drought stress	4.634
SRR1811619	moderate drought stress	4.619

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.127
DRR006520	Root Summer glycyrrhizin high producing strain	4.922
DRR006521	Root Winter glycyrrhizin high producing strain	4.649
DRR006522	Root Winter glycyrrhizin high producing strain	4.504
DRR006523	Root Summer glycyrrhizin low producing strain	6.249
DRR006524	Root Summer glycyrrhizin low producing strain	6.100
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.800
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.780

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	6.033
SRR2868004	Drought Stress(Tissue:root)	6.559
SRR2967015	Control (Tissue:root)	5.268

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	3.634
SRR9715740	Leave	4.017
SRR9715741	Leave	4.194
SRR9715739	Root	1.986
SRR9715742	Root	4.670
SRR9715743	Root	3.657

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.571
SRR8749028	MeJA induced 9h	2.439
SRR8749029	MeJA induced 9h	2.144
SRR8749030	Uninduced	1.077
SRR8749031	Uninduced	0.385
SRR8749032	Uninduced	0.464

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	7.188
SRR8400027	Control-Root	7.809