Gene detail information of Glyur001036s00023775.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G14740.2 | 2.00E-78 | RING/FYVE/PHD zinc finger superfamily protein |
| NR | XP_004513788.1 | 6.73E-157 | PREDICTED: protein AF-17-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q9C5X4|ATX1_ARATH | 4.00E-26 | Histone-lysine N-methyltransferase ATX1 |
| trEMBL | tr|G7ZV42|G7ZV42_MEDTR | 6.00E-135 | PHD-zinc-finger-like domain protein {ECO:0000313|EMBL:KEH19193.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01036 | 65768 | 67031 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | PHD |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001036s00023775.1 | PF13831.1 | PHD_2 | 137 | 173 | 1.10E-10 |
| Glyur001036s00023775.1 | PF13832.1 | zf-HC5HC2H_2 | 184 | 295 | 4.00E-27 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.480 |
| SRR1783600 | control | 3.646 |
| SRR1783602 | moderate drought stress | 1.742 |
| SRR1811619 | moderate drought stress | 1.503 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.256 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.774 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.357 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.218 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.265 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.260 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 9.126 |
| SRR2868004 | Drought Stress(Tissue:root) | 4.491 |
| SRR2967015 | Control (Tissue:root) | 4.476 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 2.540 |
| SRR9715740 | Leave | 0.083 |
| SRR9715741 | Leave | 0.480 |
| SRR9715739 | Root | 1.481 |
| SRR9715742 | Root | 0.994 |
| SRR9715743 | Root | 1.392 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.622 |
| SRR8749028 | MeJA induced 9h | 3.700 |
| SRR8749029 | MeJA induced 9h | 3.047 |
| SRR8749030 | Uninduced | 0.213 |
| SRR8749031 | Uninduced | 0.118 |
| SRR8749032 | Uninduced | 0.244 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 4.764 |
| SRR8400027 | Control-Root | 4.017 |