Gene detail information of Glyur001036s00023778.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G78570.10rhamnose biosynthesis 1
NRXP_006585326.10PREDICTED: probable rhamnose biosynthetic enzyme 1-like isoform X2 [Glycine max]
COGYP_007768743.12.00E-89dTDP-glucose 4,6-dehydratase [Coprococcus catus GD/7]
Swissprottr|Q9SYM5|RHM1_ARATH0UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose 4-keto-reductase {ECO:0000305|PubMed:17190829}
trEMBLtr|I1KTG8|I1KTG8_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G15680.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold010367522678524+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K12450RHM EC:4.2.1.76 Amino sugar and nucleotide sugar metabolism map00520


Gene Ontology

biological_process

GO:0009225  nucleotide-sugar metabolic process


molecular_function

GO:0003824  catalytic activity

GO:0008460  dTDP-glucose 4,6-dehydratase activity

GO:0050662  coenzyme binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001036s00023778.2PF01370.16Epimerase92511.10E-54
Glyur001036s00023778.2PF04321.12RmlD_sub_bind3866035.40E-15


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control111.753
SRR1783600control111.550
SRR1783602moderate drought stress50.700
SRR1811619moderate drought stress51.182

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain79.985
DRR006520Root Summer glycyrrhizin high producing strain79.602
DRR006521Root Winter glycyrrhizin high producing strain91.191
DRR006522Root Winter glycyrrhizin high producing strain88.043
DRR006523Root Summer glycyrrhizin low producing strain90.822
DRR006524Root Summer glycyrrhizin low producing strain91.451
DRR006525Leaf Summer glycyrrhizin high producing strain30.293
DRR006526Leaf Summer glycyrrhizin high producing strain30.319

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)160.114
SRR2868004Drought Stress(Tissue:root)79.499
SRR2967015Control (Tissue:root)72.024

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave45.290
SRR9715740Leave33.191
SRR9715741Leave42.642
SRR9715739Root34.080
SRR9715742Root141.367
SRR9715743Root115.986

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h70.039
SRR8749028MeJA induced 9h115.295
SRR8749029MeJA induced 9h85.468
SRR8749030Uninduced93.595
SRR8749031Uninduced74.591
SRR8749032Uninduced59.064

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root168.939
SRR8400027Control-Root181.202

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved