Gene detail information of Glyur001040s00028722.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G17760.15.00E-76damaged DNA binding;exodeoxyribonuclease IIIs
NRXP_004516810.12.18E-130PREDICTED: uncharacterized protein LOC101513374 [Cicer arietinum]
trEMBLtr|A0A072U0N1|A0A072U0N1_MEDTR1.00E-126Damaged DNA-binding protein {ECO:0000313|EMBL:KEH19340.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold010401209319750-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K02830HRAD1, RAD17 EC:3.1.11.2 Cell cycle - yeast map04111
Meiosis - yeastmap04113


Gene Ontology

biological_process

GO:0006281  DNA repair


cellular_component

GO:0005634  nucleus


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001040s00028722.1PF02144.11Rad1341631.60E-05
Glyur001040s00028722.1PF02144.11Rad11913213.90E-08


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control2.580
SRR1783600control2.557
SRR1783602moderate drought stress2.398
SRR1811619moderate drought stress2.894

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain4.489
DRR006520Root Summer glycyrrhizin high producing strain4.179
DRR006521Root Winter glycyrrhizin high producing strain6.978
DRR006522Root Winter glycyrrhizin high producing strain6.808
DRR006523Root Summer glycyrrhizin low producing strain4.607
DRR006524Root Summer glycyrrhizin low producing strain4.533
DRR006525Leaf Summer glycyrrhizin high producing strain3.644
DRR006526Leaf Summer glycyrrhizin high producing strain3.939

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)8.946
SRR2868004Drought Stress(Tissue:root)8.595
SRR2967015Control (Tissue:root)7.810

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave4.594
SRR9715740Leave6.504
SRR9715741Leave5.072
SRR9715739Root1.609
SRR9715742Root2.957
SRR9715743Root2.594

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h17.168
SRR8749028MeJA induced 9h8.798
SRR8749029MeJA induced 9h13.956
SRR8749030Uninduced6.155
SRR8749031Uninduced7.022
SRR8749032Uninduced6.800

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root8.750
SRR8400027Control-Root8.662

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved