Gene detail information of Glyur001041s00027454.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G20510.10OPC-8:0 CoA ligase1
NRXP_003545004.10PREDICTED: 4-coumarate--CoA ligase-like 5-like [Glycine max]
COGYP_007042205.11.00E-101putative 4-coumarate-CoA ligase 3 [Saccharothrix espanaensis DSM 44229]
Swissprottr|Q84P21|4CLL5_ARATH04-coumarate--CoA ligase-like 5
trEMBLtr|I1MBZ0|I1MBZ0_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G39840.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold010416134664057+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10526OPCL1 EC:6.2.1.- alpha-Linolenic acid metabolism map00592


Gene Ontology

biological_process

GO:0008152  metabolic process


molecular_function

GO:0003824  catalytic activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001041s00027454.1PF00501.23AMP-binding514566.20E-95
Glyur001041s00027454.1PF13193.1AMP-binding_C4655173.70E-07


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control97.842
SRR1783600control98.201
SRR1783602moderate drought stress167.270
SRR1811619moderate drought stress167.424

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain129.429
DRR006520Root Summer glycyrrhizin high producing strain127.933
DRR006521Root Winter glycyrrhizin high producing strain35.873
DRR006522Root Winter glycyrrhizin high producing strain35.315
DRR006523Root Summer glycyrrhizin low producing strain142.172
DRR006524Root Summer glycyrrhizin low producing strain141.548
DRR006525Leaf Summer glycyrrhizin high producing strain23.820
DRR006526Leaf Summer glycyrrhizin high producing strain23.743

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)96.707
SRR2868004Drought Stress(Tissue:root)146.657
SRR2967015Control (Tissue:root)167.003

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave310.297
SRR9715740Leave85.331
SRR9715741Leave331.839
SRR9715739Root246.214
SRR9715742Root454.203
SRR9715743Root393.805

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h81.344
SRR8749028MeJA induced 9h36.957
SRR8749029MeJA induced 9h59.958
SRR8749030Uninduced60.792
SRR8749031Uninduced36.962
SRR8749032Uninduced57.505

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root139.993
SRR8400027Control-Root120.811

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved