Gene detail information of Glyur001042s00036962.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G52720.1 | 6.00E-35 | alpha carbonic anhydrase 1 |
| NR | XP_007144395.1 | 3.82E-101 | hypothetical protein PHAVU_007G152600g [Phaseolus vulgaris] |
| COG | YP_006413853.1 | 2.00E-24 | carbonic anhydrase [Thiocystis violascens DSM 198] |
| Swissprot | tr|O04846|ATCA1_ARATH | 5.00E-41 | Alpha carbonic anhydrase 1, chloroplastic (Precursor) |
| trEMBL | tr|V7BEV9|V7BEV9_PHAVU | 1.00E-101 | Uncharacterized protein {ECO:0000313|EMBL:ESW16389.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01042 | 6711 | 19963 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01674 | cah | EC:4.2.1.1 | Nitrogen metabolism | map00910 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001042s00036962.1 | PF00194.16 | Carb_anhydrase | 29 | 146 | 2.90E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.102 |
| SRR1783600 | control | 0.103 |
| SRR1783602 | moderate drought stress | 3.439 |
| SRR1811619 | moderate drought stress | 3.426 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.690 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.909 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.529 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.841 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 48.295 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 48.490 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 2.872 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.768 |
| SRR2967015 | Control (Tissue:root) | 0.303 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 75.529 |
| SRR9715740 | Leave | 77.298 |
| SRR9715741 | Leave | 84.653 |
| SRR9715739 | Root | 1.547 |
| SRR9715742 | Root | 8.061 |
| SRR9715743 | Root | 6.973 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.133 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.103 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 1.202 |
| SRR8400027 | Control-Root | 1.948 |